632701b698bfd2e27a05c8ad7acac7df *CITATION
4aadf62ab8cc04d6f159f0ddd37ac0e9 *DESCRIPTION
e158a26a6f3676f282298f59b8aa1c16 *INDEX
a0882c42907bb9bed477ab879e808d66 *Meta/Rd.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
710945920524d028774659f32616c7c1 *Meta/hsearch.rds
716a8feb87d91b85f4017ea4be620905 *Meta/links.rds
13c7c4a1e5b049842048747534c992da *Meta/nsInfo.rds
036369902ec6c8af02ec3de42a715d9e *Meta/package.rds
e979ccb138aed536d8c45bda983f1a4d *Meta/vignette.rds
ac7fe82d2ad864c20f2aae1fb82c4fe9 *NAMESPACE
05b8bce6dc4615009a2537217f24684e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/epialleleR
a6c49354ee9ff65ae0857f322828eee0 *R/epialleleR.rdb
15ab070af3c70a085d5151ddc6336821 *R/epialleleR.rdx
01664ea050259d14f850c3dd52a5264e *doc/epialleleR.R
4aef720c37fa96782ef30f37f401e346 *doc/epialleleR.Rmd
1f9a5410638bb4b1956f7700275162a4 *doc/epialleleR.html
1e160b038b91832ecedec3672bfc256b *doc/index.html
6d99da2463ce194e50373aa46a46832e *doc/values.R
03f85e834ce630a5931fea355ddbeb5c *doc/values.Rmd
8bb52a009bd9e02f989c1c5787f95ff1 *doc/values.html
58f833017ad83577c148c2c1e597e132 *extdata/amplicon.bed
b021a04d94a76e4d8609419f929d177b *extdata/amplicon.vcf.gz
fb65422720c8a20dd52b4cb349319df5 *extdata/amplicon.vcf.gz.tbi
08f6f073a2b915f0cce062b75daa8c39 *extdata/amplicon000meth.bam
8a9175527138cb03e08ccbb5eb1be447 *extdata/amplicon010meth.bam
5090d9f275a998bf55b41295e3a9a97a *extdata/amplicon100meth.bam
532c9c5addb7bb3edd980fbe8c51d680 *extdata/capture.bam
8238372c018ccbc0466a6f724fbaa479 *extdata/capture.bed
152066bcc0d8b507efea3a5ae073c000 *extdata/capture.vcf.gz
f0b16c21dcc3c8d56799294862c6c3d7 *extdata/capture.vcf.gz.tbi
eedee46794a999f6f590821b6f428021 *extdata/test/bsmap-pe-namesort-zs.bam
56f6d441dd87609b5199cae6f23dd38b *extdata/test/bsmap-pe-unsort-zs.bam
51e64e3834bfbd4cb8f63bcef10742f9 *extdata/test/bsmap-se-unsort-zs.bam
c730ae0b3d9e8e2c17fa5451286fcfe3 *extdata/test/bwameth-pe-namesort-yd.bam
39b3fe1f5a4caee160fdff98e42a7dec *extdata/test/bwameth-pe-unsort-yd.bam
59ea2d42f1d52689ba1c46a32c073de2 *extdata/test/bwameth-se-unsort-yd.bam
3bd4de272359f2ac18d2e5550a5b69c6 *extdata/test/bwameth-se-unsort.bam
ea45fdb271bd7d05ba62784f111818f2 *extdata/test/dragen-pe-namesort-xg-xm.bam
50bb3ae5e6a6917cbe29b1e3a8011e18 *extdata/test/dragen-pe-namesort-xg.bam
30bbb6967b8566d660e5c165e0673095 *extdata/test/dragen-pe-unsort-xg-xm.bam
e42654051562b1d37a3a881290361d1a *extdata/test/dragen-pe-unsort-xg.bam
bc5d756188832c02da88a55e5c969ee1 *extdata/test/dragen-pe.CX_report.txt.gz
f27b657a8644b7a190758d569a7134ca *extdata/test/dragen-se-unsort-xg-xm.bam
b970b667e937f219c1037bd223174c6c *extdata/test/dragen-se-unsort-xg.bam
958b1ce872a2853895c3b475eddf5815 *extdata/test/dragen-se.CX_report.txt.gz
7f81afe3a9442594661d37749f32d9b5 *extdata/test/empty.bam
50c39c99240cbde64a078c5141b7bd25 *extdata/test/reference.fasta.gz
7c064ec257d0c934b8715dd7b2ff4973 *extdata/test/reference.fasta.gz.fai
7dea362b3fac8e00956a4952a3d4f474 *extdata/test/reference.fasta.gz.gzi
7966570ddba8e7e49f9d4aab73787afc *help/AnIndex
f9c73f5f6e040a50a44cb11cd25311e8 *help/aliases.rds
07c544218fa445878b0817672ba2ac62 *help/epialleleR.rdb
fa2d29b0f58d9e708cf02ffbb47ad062 *help/epialleleR.rdx
cc4ac66f83b0c084503a30e631dcb739 *help/paths.rds
fc1e06d2eec2aa9aa47086267cff2cb4 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
cba7e8776785f8860978937df2e6d3aa *libs/x64/epialleleR.dll
b9078b998a8bc733714d0c2d6854d484 *libs/x64/symbols.rds
c6488bb9ece988cdd1ae8e7a8a46f5b5 *unitTests/test_callMethylation.R
a8690a788937f92bb8e8594b3f7a3536 *unitTests/test_extractPatterns.R
7d58c77c7a24dcf649b5c367c7c2cb5c *unitTests/test_generateBedEcdf.R
cc3b30eef6fe5fcb2242414220575adb *unitTests/test_generateBedReport.R
1834e36a5ba23a706b7410c843bf10e8 *unitTests/test_generateCytosineReport.R
f0f1a83f94db3fe65ca942334e817cd9 *unitTests/test_generateMhlReport.R
6ae098b505f772523affe99dc3dd138d *unitTests/test_generateVcfReport.R
3c5a0a9b2910244bee495afd52267c32 *unitTests/test_internals.R
2828c778c4a87a848156c0928ecc005e *unitTests/test_plotPatterns.R
b4117f11523453d0e3bec73291f3b889 *unitTests/test_preprocessBam.R
8211b224e9c7328761b03b5e2b548a50 *unitTests/test_preprocessGenome.R
b74fa5f432d9faf62cca3f1580efbf8e *unitTests/test_simulateBam.R
