Package: edge
Type: Package
Title: Extraction of Differential Gene Expression
Date: 2015-04-15
Version: 2.42.0
Author: John D. Storey, Jeffrey T. Leek and Andrew J. Bass
Maintainer: John D. Storey <jstorey@princeton.edu>, Andrew J. Bass
 <ajbass@emory.edu>
biocViews: MultipleComparison, DifferentialExpression, TimeCourse,
        Regression, GeneExpression, DataImport
Description: The edge package implements methods for carrying out
        differential expression analyses of genome-wide gene expression
        studies. Significance testing using the optimal discovery
        procedure and generalized likelihood ratio tests (equivalent to
        F-tests and t-tests) are implemented for general study designs.
        Special functions are available to facilitate the analysis of
        common study designs, including time course experiments. Other
        packages such as sva and qvalue are integrated in edge to
        provide a wide range of tools for gene expression analysis.
VignetteBuilder: knitr
Imports: methods, splines, sva, qvalue(>= 1.99.0), MASS
Suggests: testthat, knitr, ggplot2, reshape2
Depends: R(>= 3.1.0), Biobase
URL: https://github.com/jdstorey/edge
BugReports: https://github.com/jdstorey/edge/issues
LazyData: true
License: MIT + file LICENSE
NeedsCompilation: yes
RoxygenNote: 5.0.1
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:25:58 UTC
RemoteUrl: https://github.com/bioc/edge
RemoteRef: RELEASE_3_22
RemoteSha: fe1a757320d9945a8e95a146a87164956370ed85
Packaged: 2025-11-11 16:42:37 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 16:47:20 UTC; windows
Archs: x64
