Package: debrowser
Type: Package
Title: Interactive Differential Expresion Analysis Browser
Version: 1.38.0
Date: 2020-12-07
Author: Alper Kucukural <alper.kucukural@umassmed.edu>, Onur Yukselen
        <onur.yukselen@umassmed.edu>, Manuel Garber
        <manuel.garber@umassmed.edu>
Maintainer: Alper Kucukural <alper.kucukural@umassmed.edu>
Description: Bioinformatics platform containing interactive plots and
        tables for differential gene and region expression studies.
        Allows visualizing expression data much more deeply in an
        interactive and faster way. By changing the parameters, users
        can easily discover different parts of the data that like never
        have been done before. Manually creating and looking these
        plots takes time. With DEBrowser users can prepare plots
        without writing any code. Differential expression, PCA and
        clustering analysis are made on site and the results are shown
        in various plots such as scatter, bar, box, volcano, ma plots
        and Heatmaps.
Depends: R (>= 3.5.0),
License: GPL-3 + file LICENSE
Imports: shiny, jsonlite, shinyjs, shinydashboard, shinyBS, gplots, DT,
        ggplot2, RColorBrewer, annotate, AnnotationDbi, DESeq2, DOSE,
        igraph, grDevices, graphics, stats, utils, GenomicRanges,
        IRanges, S4Vectors, SummarizedExperiment, stringi, reshape2,
        org.Hs.eg.db, org.Mm.eg.db, limma, edgeR, clusterProfiler,
        methods, sva, RCurl, enrichplot, colourpicker, plotly,
        heatmaply, Harman, pathview, apeglm, ashr
RoxygenNote: 7.2.3
Encoding: UTF-8
Suggests: testthat, rmarkdown, knitr
VignetteBuilder: knitr, rmarkdown
URL: https://github.com/UMMS-Biocore/debrowser
BugReports: https://github.com/UMMS-Biocore/debrowser/issues/new
biocViews: Sequencing, ChIPSeq, RNASeq, DifferentialExpression,
        GeneExpression, Clustering, ImmunoOncology
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libmagick++-dev gsfonts libicu-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:30:54 UTC
RemoteUrl: https://github.com/bioc/debrowser
RemoteRef: RELEASE_3_22
RemoteSha: 5dcc10b4f86b06e760fcd6d28fb1da6deb9b646e
NeedsCompilation: no
Packaged: 2025-11-11 16:51:01 UTC; root
Built: R 4.5.2; ; 2025-11-11 17:00:34 UTC; windows
