Package: circRNAprofiler
Type: Package
Title: circRNAprofiler: An R-Based Computational Framework for the
        Downstream Analysis of Circular RNAs
Version: 1.24.0
Author: Simona Aufiero
Maintainer: Simona Aufiero <simo.aufiero@gmail.com>
Description: R-based computational framework for a comprehensive in
        silico analysis of circRNAs. This computational framework
        allows to combine and analyze circRNAs previously detected by
        multiple publicly available annotation-based circRNA detection
        tools. It covers different aspects of circRNAs analysis from
        differential expression analysis, evolutionary conservation,
        biogenesis to functional analysis.
License: GPL-3
Encoding: UTF-8
biocViews: Annotation, StructuralPrediction, FunctionalPrediction,
        GenePrediction, GenomeAssembly, DifferentialExpression
Depends: R (>= 4.4.0)
RoxygenNote: 7.2.3
Suggests: testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra,
        ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
        BiocManager,
Imports: dplyr, magrittr, readr, rtracklayer, stringr, stringi, DESeq2,
        edgeR, GenomicRanges, IRanges, seqinr, R.utils, reshape2,
        ggplot2, utils, rlang, S4Vectors, stats, GenomeInfoDb,
        universalmotif, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
        Biostrings, gwascat, BSgenome,
VignetteBuilder: knitr
URL: https://github.com/Aufiero/circRNAprofiler
BugReports: https://github.com/Aufiero/circRNAprofiler/issues
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:53:06 UTC
RemoteUrl: https://github.com/bioc/circRNAprofiler
RemoteRef: RELEASE_3_22
RemoteSha: 8f3c45361fae951aa95330763a9cf58ea890a7f0
NeedsCompilation: no
Packaged: 2025-11-11 16:46:09 UTC; root
Built: R 4.5.2; ; 2025-11-11 17:01:06 UTC; windows
