Package: cbpManager
Type: Package
Title: Generate, manage, and edit data and metadata files suitable for
        the import in cBioPortal for Cancer Genomics
Version: 1.18.0
Date: 2021-03-16
Authors@R: c(
    person(given = "Arsenij", family = "Ustjanzew", email = "arsenij.ustjanzew@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-1014-4521")),
    person("Federico", "Marini", role = "aut", email = "marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')))
Description: This R package provides an R Shiny application that
        enables the user to generate, manage, and edit data and
        metadata files suitable for the import in cBioPortal for Cancer
        Genomics. Create cancer studies and edit its metadata. Upload
        mutation data of a patient that will be concatenated to the
        data_mutation_extended.txt file of the study. Create and edit
        clinical patient data, sample data, and timeline data. Create
        custom timeline tracks for patients.
License: AGPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://arsenij-ust.github.io/cbpManager/index.html
BugReports: https://github.com/arsenij-ust/cbpManager/issues
Depends: shiny, shinydashboard
Imports: utils, DT, htmltools, vroom, plyr, dplyr, magrittr, jsonlite,
        rapportools, basilisk, reticulate, shinyBS, shinycssloaders,
        rintrojs, rlang, markdown
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
StagedInstall: no
Collate: 'basilisk.R' 'dynamicTable.R' 'modulesResourceButtons.R'
        'cbpManager-pkg.R' 'functions.R' 'global.R' 'cbpManager.R'
        'shinyAppServer.R' 'shinyAppUI.R'
biocViews: ImmunoOncology, DataImport, DataRepresentation, GUI,
        ThirdPartyClient, Preprocessing, Visualization
Config/testthat/edition: 3
Config/pak/sysreqs: make libicu-dev libpng-dev python3 zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:09:08 UTC
RemoteUrl: https://github.com/bioc/cbpManager
RemoteRef: RELEASE_3_22
RemoteSha: 5565444f8f6a35bd3d50aa5f9957b40ffb44679b
NeedsCompilation: no
Packaged: 2025-11-16 07:33:15 UTC; root
Author: Arsenij Ustjanzew [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-1014-4521>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew@gmail.com>
Built: R 4.5.2; ; 2025-11-16 07:35:02 UTC; windows
