Package: categoryCompare
Version: 1.54.0
Title: Meta-analysis of high-throughput experiments using feature
        annotations
Author: Robert M. Flight <rflight79@gmail.com>
Maintainer: Robert M. Flight <rflight79@gmail.com>
URL: https://github.com/rmflight/categoryCompare
BugReports: https://github.com/rmflight/categoryCompare/issues
License: GPL-2
Depends: R (>= 2.10), Biobase, BiocGenerics (>= 0.13.8),
Suggests: knitr, GO.db, KEGGREST, estrogen, org.Hs.eg.db, hgu95av2.db,
        limma, affy, genefilter, rmarkdown
Imports: AnnotationDbi, hwriter, GSEABase, Category (>= 2.33.1),
        GOstats, annotate, colorspace, graph, RCy3 (>= 1.99.29),
        methods, grDevices, utils
LazyLoad: yes
Description: Calculates significant annotations (categories) in each of
        two (or more) feature (i.e. gene) lists, determines the overlap
        between the annotations, and returns graphical and tabular data
        about the significant annotations and which combinations of
        feature lists the annotations were found to be significant.
        Interactive exploration is facilitated through the use of
        RCytoscape (heavily suggested).
SystemRequirements: Cytoscape (>= 3.6.1) (if used for visualization of
        results, heavily suggested)
TODO: Text and HTML output without graphs.
biocViews: Annotation, GO, MultipleComparison, Pathways, GeneExpression
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev libpng-dev libxml2-dev libssl-dev
        python3 libzmq3-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:11:00 UTC
RemoteUrl: https://github.com/bioc/categoryCompare
RemoteRef: RELEASE_3_22
RemoteSha: 3381da0be90b5149a441400706504e989ea27c3c
NeedsCompilation: no
Packaged: 2025-11-11 14:21:17 UTC; root
Built: R 4.5.2; ; 2025-11-11 14:25:58 UTC; windows
