Package: bioassayR
Type: Package
Title: Cross-target analysis of small molecule bioactivity
Version: 1.48.0
Date: 2024-10-21
Author: Tyler Backman, Ronly Schlenk, Thomas Girke
Maintainer: Thomas Girke <tgirke@citrus.ucr.edu>
Depends: R (>= 3.5.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods,
        Matrix, rjson, BiocGenerics (>= 0.13.8)
Imports: XML, ChemmineR
Suggests: BiocStyle, RCurl, biomaRt, knitr, knitcitations,
        knitrBootstrap, testthat, ggplot2, rmarkdown
Description: bioassayR is a computational tool that enables
        simultaneous analysis of thousands of bioassay experiments
        performed over a diverse set of compounds and biological
        targets. Unique features include support for large-scale
        cross-target analyses of both public and custom bioassays,
        generation of high throughput screening fingerprints (HTSFPs),
        and an optional preloaded database that provides access to a
        substantial portion of publicly available bioactivity data.
URL: https://github.com/girke-lab/bioassayR
BugReports: https://github.com/girke-lab/bioassayR/issues
License: Artistic-2.0
biocViews: ImmunoOncology, MicrotitrePlateAssay, CellBasedAssays,
        Visualization, Infrastructure, DataImport, Bioinformatics,
        Proteomics, Metabolomics
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R BioassayDB-accessors.R
        bioassay-accessors.R loadingData.R queries.R
        bioassaySet-accessors.R bayesian-cross-reactivity.R
        similarity.R
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev libpng-dev librsvg2-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:16:39 UTC
RemoteUrl: https://github.com/bioc/bioassayR
RemoteRef: RELEASE_3_22
RemoteSha: 42cc73b5985eaa6eb02d42e6be67849badae9471
NeedsCompilation: no
Packaged: 2025-11-11 13:22:11 UTC; root
Built: R 4.5.2; ; 2025-11-11 13:27:41 UTC; windows
