Package: anglemania
URL: https://github.com/BIMSBbioinfo/anglemania/
Title: Feature Extraction for scRNA-seq Dataset Integration
Version: 1.0.0
Description: anglemania extracts genes from multi-batch scRNA-seq
        experiments for downstream dataset integration. It shows
        improvement over the conventional usage of highly-variable
        genes for many integration tasks. We leverage gene-gene
        correlations that are stable across batches to identify
        biologically informative genes which are less affected by batch
        effects. Currently, its main use is for single-cell RNA-seq
        dataset integration, but it can be applied for other
        multi-batch downstream analyses such as NMF.
Authors@R: c(
    person("Aaron", "Kollotzek", email = "aaron.kollotzek@mdc-berlin.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0009-7142-4015")),
    person("Vedran", "Franke", email = "vedran.franke@mdc-berlin.de", role = c("aut"),
           comment = c(ORCID = "0000-0003-3606-6792")),
    person("Artem", "Baranovskii", email = "artem.baranowsky@gmail.com", role = c("aut")),
    person("Altuna", "Akalin", email = "altuna.akalin@mdc-berlin.de", role = "aut"),
    person("SFB1588", role = "fnd", comment = "Funded by the DFG – Deutsche Forschungsgemeinschaft")
  )
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp, rmio, bigstatsr
Depends: R (>= 4.4.0)
Imports: bigparallelr, bigstatsr, checkmate, digest, dplyr, Matrix,
        pbapply, S4Vectors, SingleCellExperiment, stats,
        SummarizedExperiment, tidyr, withr
Suggests: batchelor, BiocStyle, bluster, knitr, magick, matrixStats,
        patchwork, RcppArmadillo, rmarkdown, scater, scran, Seurat,
        splatter, testthat (>= 3.0.0), UpSetR
VignetteBuilder: knitr
biocViews: SingleCell, BatchEffect, MultipleComparison,
        FeatureExtraction
BiocType: Software
Config/testthat/edition: 3
BugReports: https://github.com/BIMSBbioinfo/anglemania/issues
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:38:09 UTC
RemoteUrl: https://github.com/bioc/anglemania
RemoteRef: RELEASE_3_22
RemoteSha: 3acc9da7a506248365a35e024ee0d5000a9fa99b
NeedsCompilation: yes
Packaged: 2025-11-19 07:32:46 UTC; root
Author: Aaron Kollotzek [aut, cre] (ORCID:
    <https://orcid.org/0009-0009-7142-4015>),
  Vedran Franke [aut] (ORCID: <https://orcid.org/0000-0003-3606-6792>),
  Artem Baranovskii [aut],
  Altuna Akalin [aut],
  SFB1588 [fnd] (Funded by the DFG – Deutsche Forschungsgemeinschaft)
Maintainer: Aaron Kollotzek <aaron.kollotzek@mdc-berlin.de>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-19 07:35:29 UTC; windows
Archs: x64
