d7aa31d0d53cc84a881dbb71bbfe7baa *CITATION
980bffc3df2daaabf906f19552ab4a9b *DESCRIPTION
0eadf2e6a58d55ddb0ec1de365a4e2f0 *INDEX
32df7fd03d3e91f17ef25533f0551320 *Meta/Rd.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
b780a9705746f4d777d638a8411fa539 *Meta/hsearch.rds
c58a0fc5f3986baf91bc6c8c9f2a9515 *Meta/links.rds
e8e4501ad428fb972eeb7b55a44ef9f7 *Meta/nsInfo.rds
e9f7638a088911cc4ce239298ce5a0a4 *Meta/package.rds
a1dd7141df81b839ec42815ecb602333 *Meta/vignette.rds
c536182724d45cfa0421c4e450e13035 *NAMESPACE
b6edcf533d76b538ff106fb6009a2a1b *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/affylmGUI
66e310e37cd81d9d3a9db4f6a04b0331 *R/affylmGUI.rdb
f8ec0d9f27c92b016ed2f89d1e8d0fcf *R/affylmGUI.rdx
9990c80cc380622c93039516e5ba864d *doc/CustMenu.html
1c040ecf3a1de953877545704ebc5704 *doc/LifeCycle/ChooseContrast.png
d1e0fae6aec1b361d9ad749bb791a8e0 *doc/LifeCycle/ChooseContrastsParameterization.png
100308bb6b8e6dcbac113c0624592449 *doc/LifeCycle/ComputeContrastsSelected.png
d3f95c82e20f96b6dbf2a2d4af09b4a8 *doc/LifeCycle/ComputeLinearModelFitSelected.png
dca4297055869f5933fdb2098e6a0865 *doc/LifeCycle/ContrastsDefined.png
2ffebd9ab536f4896899609717e2ddbd *doc/LifeCycle/ContrastsName.png
d271759a474645a1643e96880b536676 *doc/LifeCycle/DEgeneLabelOptions.png
4ee5fbd4b1476e0f5c5dfcc339a87920 *doc/LifeCycle/DataSetName.png
5f6c83eaf24ee73a650f4abfe17391da *doc/LifeCycle/ExportHTMLselected.png
ac8be59c066833a75eef7a0728d980fb *doc/LifeCycle/HTMLcomponents.png
fd00af7252d50261c9ee8ee3d25e77ac *doc/LifeCycle/HTMLfilename.png
df19c02e487527984436219c0337ca59 *doc/LifeCycle/LifeCycle.html
92514f69e6454e15154cb112c643440b *doc/LifeCycle/MAcontrastPlot.png
14b56adcb9f9c5b0a570e40f3540624d *doc/LifeCycle/MAcontrastPlotLabels.png
0850f20f17c48f495496126393023a4b *doc/LifeCycle/MAplotContrast.png
c40644103dfc236be85bea1cd69fa7fb *doc/LifeCycle/MalariaLifeCycle.html
b6df9eba814143c9fed6641bde467d75 *doc/LifeCycle/MalariaLifeCycle_files/NormalizedIntensityBoxPlot.png
74f822a666f56fb05e6f27513bd007f3 *doc/LifeCycle/MalariaLifeCycle_files/RawIntensityBoxPlot.png
6138a3c69c2745e93d4907a5994c4138 *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.1.png
3c7e7f0808f0cf659598a9a72134cedf *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.2.png
1b31260257e7a4a632b32a4357d4272a *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.3.png
42737bc73c748c210cfe9b7c24dc7001 *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.4.png
9ccff70b94427c46f9a7bf34bd7471cb *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.5.png
9ebad8104a8f8b1a348fcfe021204b93 *doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.6.png
659f13a9d3d59f06d0bd8c69dc12a9d9 *doc/LifeCycle/NewSelected.png
aa38995c6cb378d0317a11596241b44e *doc/LifeCycle/NormalizeSelected.png
46f9590675db7ace106fc417ba1517e0 *doc/LifeCycle/PNGparams.png
16f1bcdedf79ef46cd7cb6ab04cb612f *doc/LifeCycle/R2HTML.css
9131bbaf0d7da6ab10475f50b05e1320 *doc/LifeCycle/R2HTMLlogo.gif
0b571855567d1d637483de16e31c70fd *doc/LifeCycle/R2HTMLlogo.png
ffa06acc5a05c350e924816cd175f9e5 *doc/LifeCycle/RMAselected.png
617f8de747439d8ab9b8ba4c753ce4a8 *doc/LifeCycle/TargetsFileSelected.png
3a086f000913f1effc3a963fd4fae954 *doc/LifeCycle/ToptableMzvsLS.png
e73a2cf5743a3bd505d0afbb82b18e7f *doc/LifeCycle/ToptableOptions.png
f8feb7de2620b4d0c41b542203e0f44c *doc/LifeCycle/ToptableSelected.png
8a80533ece6d89331363f4e58aab5a72 *doc/LifeCycle/chooseDir.png
54af399c05926939078c707c705c56bc *doc/LifeCycle/mainWin.png
a9d40ef8ce2ba73b0891ec1d239570af *doc/LifeCycle/malariaTargetsInExcel.png
f76e184ccfbb52692767411b4dd84ca6 *doc/about.html
573c08688edbd3bad3820a120efebc0c *doc/about_files/BioinfBanner.jpg
0f4311050911cb7462df2780cb6d9967 *doc/about_files/HeatDiagram.png
f9cee0f98055618212baa7b60fe89622 *doc/about_files/MAplotPres10vsAbs10.png
fc154ed7a3c509a5dacdff6baf6feca0 *doc/about_files/MainWinAfterContrastsComputed.png
7b5c5d99ab641dbb4ccda11d7c1cf886 *doc/about_files/Toptable.png
7128e7627cc051bd2e35408f3b8222c9 *doc/about_files/wehilogo.gif
f9003a2ace47d524f45575cfda202527 *doc/affylmGUI.R
34494268b7ed8b33499f26103f8ca71f *doc/affylmGUI.Rnw
35b500d8d1e09d9740f5cbb14e3fe120 *doc/affylmGUI.pdf
1e7eb4047d0be4c0cce2d3f96f9ca64c *doc/changelog.txt
3f1c14ae6da145fed6f61bd4ba11c053 *doc/estrogen/AdvancedButtonShowsContrastsMatrix.png
bc59c9c9ae1c1d3ea90b2f5483ab3122 *doc/estrogen/ChooseContrast.png
55028a6bb0f5d1ff548ac9d7fbbc89a6 *doc/estrogen/ChooseContrast2.png
a162241d276499b18b62d18694f66adf *doc/estrogen/ChooseContrastsParameterization.png
4cf6e5adca55e230859ef87a8bc2ae11 *doc/estrogen/ChooseNormalizationMethod.png
f56caa7c445646b6958ee4632aa00b2a *doc/estrogen/ChooseProbSetForDensity.png
c8b424e2fa60c5d690c20adcd1a546af *doc/estrogen/ChooseSlide.png
0b6bbd189aeeca815ab349163b4ccf4e *doc/estrogen/ComputeContrastsSelected.png
b7768569ee7ad1a5002b6b2b6c2fee5e *doc/estrogen/ContrastNamesForHeatDiagram.png
de90db3ad98888a2b8a80097e7c4e55b *doc/estrogen/ContrastsParameterizationName.png
6628c5f59c241aa4e569edc146b3ad9f *doc/estrogen/DEGeneLabelOptions.png
7a77c4419a71da0d6257dab6b0371d70 *doc/estrogen/DataSetName.png
40cf5701d1feb9b6dc5b1e0c70c31cdc *doc/estrogen/DefiningContrasts.png
a3cdc546a900bb40a5e32376649b74e9 *doc/estrogen/DensityPlot.png
4f35732973104f5fdf0009e5ff5dbe27 *doc/estrogen/DensityPlotSelected.png
6f8d5d58ebf70b0d39d391e2b68eb447 *doc/estrogen/ExportNormalizedExpressionValuesSelected.png
83bb4ff1386118740e15f70a9b684408 *doc/estrogen/ExportingExpressionValues.png
bc73405d1e63e1eac2e0c21d93e4ce43 *doc/estrogen/ExprsInExcel.png
7d23468ee000bfafbcd58f0f5ce8155b *doc/estrogen/FilenameInTitlebar.png
0f4311050911cb7462df2780cb6d9967 *doc/estrogen/HeatDiagram.png
baaf3706e990af08aa417e30b197aee3 *doc/estrogen/HeatDiagramCutoffs.png
e64d3a222c43de68ad38816d3f16f0b4 *doc/estrogen/HeatDiagramSelected.png
a108c13dca0443046ea73f2578089f4c *doc/estrogen/ImageArrayPlotSelected.png
cf1c330593222d672bff26d1faa407bf *doc/estrogen/ImagePlotInR.png
b717d0e95a6ce400aa7186084d5ceb5c *doc/estrogen/ImageQualityPlotInR.png
ed78b619e2b419343c7c64bdcff9ecf3 *doc/estrogen/ImageQualityPlotSelected.png
6a9b362d84c878c02d22f9a6d7b56819 *doc/estrogen/LinearModelFitSelected.png
82822e622620492be468cb71d3e0fc72 *doc/estrogen/LogOddsPlot.png
662928f45cb8f0f8477e7e31c49b1cd8 *doc/estrogen/LogOddsSelected.png
fdbc98755232ef8662a70224874b3061 *doc/estrogen/MAPlotLabels.png
d938304de5ac1cb01237ce7e2da2f119 *doc/estrogen/MAplotContrastSelected.png
f9cee0f98055618212baa7b60fe89622 *doc/estrogen/MAplotPres10vsAbs10.png
fc154ed7a3c509a5dacdff6baf6feca0 *doc/estrogen/MainWinAfterContrastsComputed.png
0564925774ef717955c047cce9b3b98a *doc/estrogen/MainWinLinearModelFitComputed.png
0f9b350715648f865d4436e3d6f89a71 *doc/estrogen/MainWindowArraysLoaded.png
f6ed2d2c1a4fc199b45568697072ea4f *doc/estrogen/NormalizeSelected.png
f80db6091cb166dbe1b30563f43bf557 *doc/estrogen/NormalizedIntensityBoxPlot.png
d78a8203a1179412fd3f04df6263af72 *doc/estrogen/NormalizedIntensityBoxPlotSelected.png
bd59b91c3c85ce2d5c937928d2bad441 *doc/estrogen/OpenTargetsFileDialog.png
ef786fc5228f0d8070379d4dddf9e5de *doc/estrogen/OpeningEstrogenTargets.png
5d7fea8d69285238dd03c7a75627b1e7 *doc/estrogen/PlotLabelsForDensity.png
632cdc2f903d5c6d03a67ca7b1a6d774 *doc/estrogen/PlotTitleAndAxisLabels.png
f55bb19f8e655d381efbbaa085accae5 *doc/estrogen/RNATargets.png
b9ae04403d663e52d84d95ce91e3347c *doc/estrogen/RNATargetsSelected.png
ac5b07464089eac7ffb7bf53b91711cf *doc/estrogen/RawIntensityBoxPlot.png
dcfb6fbe41723e06682b7ca013f2b9f2 *doc/estrogen/RawIntensityBoxPlotSelected.png
248f4b1385e75ad7e67b647f1c85a510 *doc/estrogen/RawIntensityBoxPlotTitle.png
b8b86b78e7ef08a71ff928dcde2cfb15 *doc/estrogen/Rgui.png
c8d5b4c5a3f6727a25708d5338f03bf1 *doc/estrogen/RvsTkrplot.png
9cfeddfb0628e6a7cb3a9998118f12c9 *doc/estrogen/SaveAsSelected.png
caea16b69623a351ef3023fd077f75d8 *doc/estrogen/SavingEstrogen.png
551c05972f2ba3da51d9a1a4039c54c2 *doc/estrogen/SelectingContrastsForVenn.png
322c001b0133147834125d986c678bbb *doc/estrogen/SetNamesForVenn.png
181fd57f2835a4f3622f0b72461400b7 *doc/estrogen/TargetsFileSelected.png
7b5c5d99ab641dbb4ccda11d7c1cf886 *doc/estrogen/Toptable.png
44baffdcb487006259abfbfea20a7aab *doc/estrogen/ToptableOptions.png
fa3ca025b54b0e70c3ecd7a378a8c7d9 *doc/estrogen/ToptableSelected.png
89ecf7af69ed6a998691ff577ebc7237 *doc/estrogen/UpDownOrBothForVenn.png
fc269dc6e777a1e6289ad3f8d4d2d789 *doc/estrogen/VennDiagram.png
7549ea9c187a8cc108d8d39577f572f7 *doc/estrogen/VennDiagramSelected.png
2ec83784b9df9fad8f6b7765c9dc1a4d *doc/estrogen/affylmGUImain.png
814d2f07cbfdf9570d831cb6bc3984c0 *doc/estrogen/estrogen.html
fdc7f12b619b286efad9addc87ccd4b0 *doc/estrogen/estrogenDir.png
6248457c0a17fe81f8ac364934d37399 *doc/estrogen/heatdiagramPlotTitle.png
5537699f0d2452ecbf15f1c9ee2e66fc *doc/estrogen/mainWinAfterNormalization.png
18224d3f67fae513fb2b1a63ddf44d30 *doc/estrogen/qqtPlot.png
a3651987695b5db1055bf5cd38035cf0 *doc/estrogen/qqtSelected.png
4c8b37c2153f6420a9c1c772836aae42 *doc/extract.Rnw
0b9090ef106259511f27fe6970079d5e *doc/extract.pdf
f597f9e134b55208aa1d19cf90e43cde *doc/index.html
b03a04340a05d10283a080e1bf6501ce *doc/input/EstrogenTargets.png
c7ef74d30141e4dbb4d094777cc972b8 *doc/input/InputFiles.html
350f2a17c3c999f3093f4a13241751ea *doc/style.css
c3ecb0468deb05a15c973b94118a43f3 *doc/windowsFocus.html
1693666efa5cdd75ac23338d406c3d61 *etc/affylmGUI-menus.txt
d41d8cd98f00b204e9800998ecf8427e *etc/recent-files.txt
a23e2eedba8e568237e5c1db49ed7fb2 *help/AnIndex
53388609e21c06b0e8c2fe8b2584b2b9 *help/affylmGUI.rdb
088014371fccb6cdd7e960283cf12bbb *help/affylmGUI.rdx
f5f3b898ea5f3fcb3aee16efcea74356 *help/aliases.rds
a85289b062bb3a01ae1ccbc27e8628ac *help/paths.rds
b281142eb9006e8e4fe8f7f7e459bbf0 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
