Package: VanillaICE
Version: 1.72.0
Title: A Hidden Markov Model for high throughput genotyping arrays
Authors@R: person("Robert", "Scharpf", email="rscharpf@jhu.edu", role=c("aut", "cre"))
Description: Hidden Markov Models for characterizing chromosomal
        alteration in high throughput SNP arrays.
Date: 2021-11-21
Depends: R (>= 3.5.0), BiocGenerics (>= 0.13.6), GenomicRanges (>=
        1.27.6), SummarizedExperiment (>= 1.5.3)
Imports: MatrixGenerics, Biobase, S4Vectors (>= 0.23.18), IRanges (>=
        1.14.0), oligoClasses (>= 1.31.1), foreach, matrixStats,
        data.table, grid, lattice, methods, GenomeInfoDb (>= 1.11.4),
        crlmm, tools, stats, utils, BSgenome.Hsapiens.UCSC.hg18
Suggests: RUnit, human610quadv1bCrlmm
Collate: 'AllClasses.R' 'AllGenerics.R' 'datasets.R' 'functions.R'
        'help.R' 'hmm-methods.R' 'methods-ArrayViews.R'
        'methods-CopyNumScanParams.R' 'methods-EmissionParam.R'
        'methods-FilterParam.R' 'methods-HMM.R' 'methods-HMMList.R'
        'methods-HmmGRanges.R' 'methods-HmmParam.R'
        'methods-HmmTrellisParam.R' 'methods-IdiogramParams.R'
        'methods-LogLik.R' 'methods-SnpArrayExperiment.R'
        'methods-SnpDataFrame.R' 'methods-TransitionParam.R'
        'methods-Viterbi.R' 'updates.R' 'zzz.R'
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
License: LGPL-2
LazyLoad: yes
biocViews: CopyNumberVariation
Roxygen:
RoxygenNote: 7.1.1
Encoding: UTF-8
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 13:59:52 UTC
RemoteUrl: https://github.com/bioc/VanillaICE
RemoteRef: RELEASE_3_22
RemoteSha: c1e8f15ec9804066fd3f495fcdcbcc65ebecadfe
NeedsCompilation: yes
Packaged: 2025-11-14 07:42:20 UTC; root
Author: Robert Scharpf [aut, cre]
Maintainer: Robert Scharpf <rscharpf@jhu.edu>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-14 07:45:28 UTC; windows
Archs: x64
