TENET-package	TENET
easyTENET	easyTENET
humanTranscriptionFactorDb	humanTranscriptionFactorDb
humanTranscriptionFactorList	humanTranscriptionFactorList
step1MakeExternalDatasets	step1MakeExternalDatasets
step2GetDifferentiallyMethylatedSites	step2GetDifferentiallyMethylatedSites
step3GetAnalysisZScores	step3GetAnalysisZScores
step4SelectMostSignificantLinksPerDNAMethylationSite	step4SelectMostSignificantLinksPerDNAMethylationSite
step5OptimizeLinks	step5OptimizeLinks
step6DNAMethylationSitesPerGeneTabulation	step6DNAMethylationSitesPerGeneTabulation
step7ExpressionVsDNAMethylationScatterplots	step7ExpressionVsDNAMethylationScatterplots
step7LinkedDNAMethylationSiteCountHistograms	step7LinkedDNAMethylationSiteCountHistograms
step7LinkedDNAMethylationSitesMotifSearching	step7LinkedDNAMethylationSitesMotifSearching
step7SelectedDNAMethylationSitesCaseVsControlBoxplots	step7SelectedDNAMethylationSitesCaseVsControlBoxplots
step7StatesForLinks	step7StatesForLinks
step7TopGenesCaseVsControlExpressionBoxplots	step7TopGenesCaseVsControlExpressionBoxplots
step7TopGenesCircosPlots	step7TopGenesCircosPlots
step7TopGenesDNAMethylationHeatmaps	step7TopGenesDNAMethylationHeatmaps
step7TopGenesExpressionCorrelationHeatmaps	step7TopGenesExpressionCorrelationHeatmaps
step7TopGenesOverlappingLinkedDNAMethylationSitesHeatmaps	step7TopGenesOverlappingLinkedDNAMethylationSitesHeatmaps
step7TopGenesSurvival	step7TopGenesSurvival
step7TopGenesTADTables	step7TopGenesTADTables
step7TopGenesUCSCBedFiles	step7TopGenesUCSCBedFiles
step7TopGenesUserPeakOverlap	step7TopGenesUserPeakOverlap
TCGADownloader	TCGADownloader
TENET	TENET
TENETCacheAllData	TENETCacheAllData
