Package: SeqGSEA
Type: Package
Title: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
        differential expression and splicing
Version: 1.50.0
Date: 2020-11-30
Author: Xi Wang <Xi.Wang@newcastle.edu.au>
Maintainer: Xi Wang <Xi.Wang@dkfz.de>
Description: The package generally provides methods for gene set
        enrichment analysis of high-throughput RNA-Seq data by
        integrating differential expression and splicing. It uses
        negative binomial distribution to model read count data, which
        accounts for sequencing biases and biological variation. Based
        on permutation tests, statistical significance can also be
        achieved regarding each gene's differential expression and
        splicing, respectively.
License: GPL (>= 3)
Depends: Biobase, doParallel, DESeq2
Imports: methods, biomaRt
Suggests: GenomicRanges
biocViews: Sequencing, RNASeq, GeneSetEnrichment, GeneExpression,
        DifferentialExpression, DifferentialSplicing, ImmunoOncology
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:14:28 UTC
RemoteUrl: https://github.com/bioc/SeqGSEA
RemoteRef: RELEASE_3_22
RemoteSha: 03ba6a6db2cc5ad461a002f341007e8ae4610851
NeedsCompilation: no
Packaged: 2025-11-11 17:36:59 UTC; root
Built: R 4.5.2; ; 2025-11-11 17:41:24 UTC; windows
