Package: SPLINTER
Type: Package
Title: Splice Interpreter of Transcripts
Version: 1.36.0
Date: 2025-07-24
Authors@R: person("Diana", "Low",  email = "lowdiana@gmail.com",
        role = c("aut", "cre"))
URL: https://github.com/dianalow/SPLINTER/
BugReports: https://github.com/dianalow/SPLINTER/issues
Description: Provides tools to analyze alternative splicing sites,
        interpret outcomes based on sequence information, select and
        design primers for site validiation and give visual
        representation of the event to guide downstream experiments.
License: GPL-2
LazyData: TRUE
Depends: R (>= 3.6.0), grDevices, stats
Imports: graphics, ggplot2, seqLogo, Biostrings, pwalign, biomaRt,
        GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz,
        IRanges, S4Vectors, Seqinfo, utils, plyr,stringr, methods,
        BSgenome.Mmusculus.UCSC.mm9, googleVis
biocViews: ImmunoOncology, GeneExpression, RNASeq, Visualization,
        AlternativeSplicing
Collate: primerpcr.R main_splinter.R
Encoding: UTF-8
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Suggests: txdbmaker, BiocStyle, knitr, rmarkdown
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:34:37 UTC
RemoteUrl: https://github.com/bioc/SPLINTER
RemoteRef: RELEASE_3_22
RemoteSha: 00c62ac1872040456855bc50a92f54866139c02d
NeedsCompilation: no
Packaged: 2025-11-13 07:44:32 UTC; root
Author: Diana Low [aut, cre]
Maintainer: Diana Low <lowdiana@gmail.com>
Built: R 4.5.2; ; 2025-11-13 07:47:51 UTC; windows
