Package: SCFA
Type: Package
Title: SCFA: Subtyping via Consensus Factor Analysis
Version: 1.20.0
Authors@R: c(
    person("Duc", "Tran", , "duct@nevada.unr.edu", role = c("aut", "cre")),
    person("Hung", "Nguyen", role = c("aut")),
    person("Tin", "Nguyen", role = c("fnd"))
    )
Description: Subtyping via Consensus Factor Analysis (SCFA) can
        efficiently remove noisy signals from consistent molecular
        patterns in multi-omics data. SCFA first uses an autoencoder to
        select only important features and then repeatedly performs
        factor analysis to represent the data with different numbers of
        factors. Using these representations, it can reliably identify
        cancer subtypes and accurately predict risk scores of patients.
License: LGPL
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0)
Imports: matrixStats, BiocParallel, torch (>= 0.3.0), coro, igraph,
        Matrix, cluster, psych, glmnet, RhpcBLASctl, stats, utils,
        methods, survival
RoxygenNote: 7.1.1
biocViews: Survival, Clustering, Classification
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
URL: https://github.com/duct317/SCFA
BugReports: https://github.com/duct317/SCFA/issues
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:03:49 UTC
RemoteUrl: https://github.com/bioc/SCFA
RemoteRef: RELEASE_3_22
RemoteSha: 00e97f9a3439e096d9529c63396280462c1f903b
NeedsCompilation: no
Packaged: 2025-11-13 07:37:27 UTC; root
Author: Duc Tran [aut, cre],
  Hung Nguyen [aut],
  Tin Nguyen [fnd]
Maintainer: Duc Tran <duct@nevada.unr.edu>
Built: R 4.5.2; ; 2025-11-13 07:39:17 UTC; windows
