Package: PoDCall
Type: Package
Title: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Version: 1.18.0
Authors@R: c(person("Hans Petter", "Brodal", 
                    role=c("aut", "cre"), 
                    email="h.p.brodal@ous-research.no"),
            person("Marine", "Jeanmougin", role="aut", 
                    email="marine.jeanmougin@rr-research.no"),
            person("Guro Elisabeth", "Lind", role="aut", 
                    email="g.e.lind@ibv.uio.no"))
Description: Reads files exported from 'QX Manager or QuantaSoft'
        containing amplitude values from a run of ddPCR (96 well plate)
        and robustly sets thresholds to determine positive droplets for
        each channel of each individual well. Concentration and
        normalized concentration in addition to other metrics is then
        calculated for each well. Results are returned as a table,
        optionally written to file, as well as optional plots
        (scatterplot and histogram) for both channels per well written
        to file. The package includes a shiny application which
        provides an interactive and user-friendly interface to the full
        functionality of PoDCall.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.4)
Imports: ggplot2, gridExtra, mclust, diptest, rlist, shiny, DT,
        LaplacesDemon, purrr, shinyjs, readr, grDevices, stats, utils
Suggests: knitr, rmarkdown, testthat, BiocStyle
VignetteBuilder: knitr
biocViews: Classification, Epigenetics, ddPCR, DifferentialMethylation,
        CpGIsland, DNAMethylation,
StagedInstall: no
Config/pak/sysreqs: make libxml2-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:05:17 UTC
RemoteUrl: https://github.com/bioc/PoDCall
RemoteRef: RELEASE_3_22
RemoteSha: 2b57b48916a692005b4c2a6709c3210fa8295b7b
NeedsCompilation: no
Packaged: 2025-11-19 07:28:43 UTC; root
Author: Hans Petter Brodal [aut, cre],
  Marine Jeanmougin [aut],
  Guro Elisabeth Lind [aut]
Maintainer: Hans Petter Brodal <h.p.brodal@ous-research.no>
Built: R 4.5.2; ; 2025-11-19 07:30:04 UTC; windows
