Package: ORFhunteR
Type: Package
biocViews: Technology, StatisticalMethod, Sequencing, RNASeq,
        Classification, FeatureExtraction
Title: Predict open reading frames in nucleotide sequences
Version: 1.18.0
Authors@R: 
        c(person(given = "Vasily V.",
             family = "Grinev",
             role = c("aut", "cre"),
             email = "grinev_vv@bsu.by",
             comment = c(ORCID = "0000-0001-9981-7333")),
      person(given = "Mikalai M.",
             family = "Yatskou",
             role = "aut"),
      person(given = "Victor V.",
             family = "Skakun",
             role = "aut"),
      person(given = "Maryna",
             family = "Chepeleva",
             role = "aut",
             comment = c(ORCID = "0000-0003-3036-4916")),
      person(given = "Petr V.",
             family = "Nazarov",
             role = "aut",
             comment = c(ORCID = "0000-0003-3443-0298")))
Description: The ORFhunteR package is a R and C++ library for an
        automatic determination and annotation of open reading frames
        (ORF) in a large set of RNA molecules. It efficiently
        implements the machine learning model based on vectorization of
        nucleotide sequences and the random forest classification
        algorithm. The ORFhunteR package consists of a set of functions
        written in the R language in conjunction with C++. The
        efficiency of the package was confirmed by the examples of the
        analysis of RNA molecules from the NCBI RefSeq and Ensembl
        databases. The package can be used in basic and applied
        biomedical research related to the study of the transcriptome
        of normal as well as altered (for example, cancer) human cells.
BugReports: https://github.com/rfctbio-bsu/ORFhunteR/issues
License: MIT License
Encoding: UTF-8
Imports: Rcpp (>= 1.0.3), BSgenome.Hsapiens.UCSC.hg38, data.table,
        stringr, randomForest, xfun, stats, utils, parallel, graphics
Depends: Biostrings, rtracklayer, Peptides
LinkingTo: Rcpp
Suggests: knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.1.9000
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:05:57 UTC
RemoteUrl: https://github.com/bioc/ORFhunteR
RemoteRef: RELEASE_3_22
RemoteSha: 92b6d5722a146ef4539c7cf6e91d72e7d7c49ed0
NeedsCompilation: yes
Packaged: 2025-11-11 16:21:18 UTC; root
Author: Vasily V. Grinev [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9981-7333>),
  Mikalai M. Yatskou [aut],
  Victor V. Skakun [aut],
  Maryna Chepeleva [aut] (ORCID: <https://orcid.org/0000-0003-3036-4916>),
  Petr V. Nazarov [aut] (ORCID: <https://orcid.org/0000-0003-3443-0298>)
Maintainer: Vasily V. Grinev <grinev_vv@bsu.by>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 16:26:53 UTC; windows
Archs: x64
