Package: OMICsPCA
Type: Package
Title: An R package for quantitative integration and analysis of
        multiple omics assays from heterogeneous samples
Version: 1.28.0
Date: 24/07/2025
Author: Subhadeep Das [aut, cre], Dr. Sucheta Tripathy [ctb]
Maintainer: Subhadeep Das <subhadeep1024@gmail.com>
Depends: R (>= 3.5.0), OMICsPCAdata
Suggests: knitr, RUnit, BiocGenerics
Description: OMICsPCA is an analysis pipeline designed to integrate
        multi OMICs experiments done on various subjects (e.g. Cell
        lines, individuals), treatments (e.g. disease/control) or time
        points and to analyse such integrated data from various various
        angles and perspectives. In it's core OMICsPCA uses Principal
        Component Analysis (PCA) to integrate multiomics experiments
        from various sources and thus has ability to over data
        insufficiency issues by using the ingegrated data as
        representatives. OMICsPCA can be used in various application
        including analysis of overall distribution of OMICs assays
        across various samples /individuals /time points; grouping
        assays by user-defined conditions; identification of source of
        variation, similarity/dissimilarity between assays, variables
        or individuals.
License: GPL-3
Encoding: UTF-8
biocViews: ImmunoOncology, MultipleComparison, PrincipalComponent,
        DataRepresentation, Workflow, Visualization,
        DimensionReduction, Clustering, BiologicalQuestion,
        EpigeneticsWorkflow, Transcription, GeneticVariability, GUI,
        BiomedicalInformatics, Epigenetics, FunctionalGenomics,
        SingleCell
Imports: HelloRanges, fpc, stats, MultiAssayExperiment, pdftools,
        methods, grDevices, utils,clValid, NbClust, cowplot, rmarkdown,
        kableExtra, rtracklayer, IRanges, Seqinfo, reshape2, ggplot2,
        factoextra, rgl, corrplot, MASS, graphics, FactoMineR,
        PerformanceAnalytics, tidyr, data.table, cluster, magick
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglu1-mesa-dev make libharfbuzz-dev
        libmagick++-dev gsfonts libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libxml2-dev libgl1-mesa-dev libssl-dev
        libpoppler-cpp-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:47:49 UTC
RemoteUrl: https://github.com/bioc/OMICsPCA
RemoteRef: RELEASE_3_22
RemoteSha: 57b6111103ddae7dcbbd720a5291a3e79b4cba00
NeedsCompilation: no
Packaged: 2025-11-14 07:41:44 UTC; root
Built: R 4.5.2; ; 2025-11-14 07:45:04 UTC; windows
