Package: NanoStringNCTools
Title: NanoString nCounter Tools
Description: Tools for NanoString Technologies nCounter Technology.
        Provides support for reading RCC files into an ExpressionSet
        derived object.  Also includes methods for QC and
        normalizaztion of NanoString data.
Version: 1.18.0
Encoding: UTF-8
Authors@R: c(person("Patrick", "Aboyoun", role = c("aut")), 
             person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")), 
             person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre")),
             person("Zhi", "Yang", role = c("ctb")))
Depends: R (>= 3.6), Biobase, S4Vectors, ggplot2
Imports: BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes,
        grDevices, IRanges, methods, pheatmap, RColorBrewer, stats,
        utils
Suggests: biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
License: MIT
Collate: SignatureSet-class.R RccMetadata.R NanoStringRccSet-class.R
        NanoStringRccSet-validity.R NanoStringRccSet-accessors.R
        NanoStringRccSet-signatures.R NanoStringRccSet-subset.R
        NanoStringRccSet-utils.R NanoStringRccSet-summary.R
        NanoStringRccSet-qc.R NanoStringRccSet-normalize.R
        NanoStringRccSet-munge.R NanoStringRccSet-ggplot.R
        NanoStringRccSet-autoplot.R readRccFile.R readRlfFile.R
        readNanoStringRccSet.R writeNanoStringRccSet.R utils.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport,
        Transcriptomics, Proteomics, mRNAMicroarray,
        ProprietaryPlatforms, RNASeq
VignetteEngine: knitr
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        make libicu-dev libpng-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:05:46 UTC
RemoteUrl: https://github.com/bioc/NanoStringNCTools
RemoteRef: RELEASE_3_22
RemoteSha: 00af008d1bcdf24e321e1341a389f483a124d0da
NeedsCompilation: no
Packaged: 2025-11-11 16:13:29 UTC; root
Author: Patrick Aboyoun [aut],
  Nicole Ortogero [aut],
  Maddy Griswold [cre],
  Zhi Yang [ctb]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
Built: R 4.5.2; ; 2025-11-11 16:19:56 UTC; windows
