check_ldsc_format       Ensures that parameters are compatible with
                        LDSC format
compute_nsize           Check for N column if not present and user
                        wants, impute N based on user's sample size.
                        *NOTE* this will be the same value for each SNP
                        which is not necessarily correct and may cause
                        issues down the line. N can also be inputted
                        with "ldsc", "sum", "giant" or "metal" by
                        passing one or multiple of these.
download_vcf            Download VCF file and its index file from Open
                        GWAS
find_sumstats           Search Open GWAS for datasets matching criteria
format_sumstats         Check that summary statistics from GWAS are in
                        a homogeneous format
formatted_example       Formatted example
get_eff_frq_allele_combns
                        Get combinations of uncorrected allele and
                        effect (and frq) columns
get_genome_builds       Infer genome builds
hg19ToHg38              UCSC Chain file hg19 to hg38
hg38ToHg19              UCSC Chain file hg38 to hg19
ieu-a-298               Local ieu-a-298 file from IEU Open GWAS
import_sumstats         Import full genome-wide GWAS summary statistics
                        from Open GWAS
index_tabular           Tabix-index file: table
infer_effect_column     Infer if effect relates to a1 or A2 if
                        ambiguously named
liftover                Genome build liftover
list_sumstats           List munged summary statistics
load_ref_genome_data    Load the reference genome data for SNPs of
                        interest
load_snp_loc_data       Loads the SNP locations and alleles for Homo
                        sapiens from dbSNP builds
parse_logs              Parse data from log files
raw_ALSvcf              GWAS Amyotrophic lateral sclerosis ieu open
                        GWAS project - Subset
raw_eduAttainOkbay      GWAS Educational Attainment Okbay 2016 - Subset
read_header             Read in file header
read_sumstats           Determine summary statistics file type and read
                        them into memory
read_vcf                Read in VCF file
register_cores          Register cores
standardise_header      Standardise the column headers in the Summary
                        Statistics files
sumstatsColHeaders      Summary Statistics Column Headers
vcf2df                  VCF to DF
write_sumstats          Write sum stats file to disk
