Package: MWASTools
Type: Package
Title: MWASTools: an integrated pipeline to perform metabolome-wide
        association studies
Version: 1.34.0
Date: 2021-11-18
Author: Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana L.
        Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Maintainer: Andrea Rodriguez-Martinez
 <andrea.rodriguez-martinez13@imperial.ac.uk>, Rafael Ayala
 <rafael.ayala@oist.jp>
Description: MWASTools provides a complete pipeline to perform
        metabolome-wide association studies. Key functionalities of the
        package include: quality control analysis of metabonomic data;
        MWAS using different association models (partial correlations;
        generalized linear models); model validation using
        non-parametric bootstrapping; visualization of MWAS results;
        NMR metabolite identification using STOCSY; and biological
        interpretation of MWAS results.
License: CC BY-NC-ND 4.0
Depends: R (>= 3.5.0)
Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
Imports: glm2, ppcor, qvalue, car, boot, grid, ggplot2, gridExtra,
        igraph, SummarizedExperiment, KEGGgraph, RCurl, KEGGREST,
        ComplexHeatmap, stats, utils
biocViews: Metabolomics, Lipidomics, Cheminformatics, SystemsBiology,
        QualityControl
NeedsCompilation: no
LazyData: true
Encoding: UTF-8
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libxml2-dev libssl-dev perl
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:35:43 UTC
RemoteUrl: https://github.com/bioc/MWASTools
RemoteRef: RELEASE_3_22
RemoteSha: 58721f5b7e01e10f38eaab3d16b820bbb805df1e
Packaged: 2025-11-11 21:27:49 UTC; root
Built: R 4.5.2; ; 2025-11-11 21:30:01 UTC; windows
