Package: MPRAnalyze
Type: Package
Title: Statistical Analysis of MPRA data
Version: 1.28.0
Authors@R: c(
	person('Tal', 'Ashuach', NULL, 'tal_ashuach@berkeley.edu', c('aut', 'cre')),
	person('David S', 'Fischer', NULL, 'david.fischer@helmholtz-muenchen.de', 'aut'),
    person('Anat', 'Kriemer', NULL, 'anat.kreimer@gmail.com', 'ctb'),
	person('Fabian', 'Theis', NULL, 'fabian.theis@helmholtz-muenchen.de', 'ctb'),
    person('Nir', 'Yosef', NULL, 'niryosef@berkeley.edu', 'ctb'))
Author: Tal Ashuach [aut, cre], David S Fischer [aut], Anat Kriemer
        [ctb], Fabian J Theis [ctb], Nir Yosef [ctb],
Maintainer: Tal Ashuach <tal_ashuach@berkeley.edu>
Description: MPRAnalyze provides statistical framework for the analysis
        of data generated by Massively Parallel Reporter Assays
        (MPRAs), used to directly measure enhancer activity. MPRAnalyze
        can be used for quantification of enhancer activity,
        classification of active enhancers and comparative analyses of
        enhancer activity between conditions. MPRAnalyze construct a
        nested pair of generalized linear models (GLMs) to relate the
        DNA and RNA observations, easily adjustable to various
        experimental designs and conditions, and provides a set of
        rigorous statistical testig schemes.
License: GPL-3
Encoding: UTF-8
Imports: BiocParallel, methods, progress, stats, SummarizedExperiment
biocViews: ImmunoOncology, Software, StatisticalMethod, Sequencing,
        GeneExpression, CellBiology, CellBasedAssays,
        DifferentialExpression, ExperimentalDesign, Classification
Suggests: knitr
ByteCompile: true
BugReports: https://github.com/YosefLab/MPRAnalyze
URL: https://github.com/YosefLab/MPRAnalyze
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:48:00 UTC
RemoteUrl: https://github.com/bioc/MPRAnalyze
RemoteRef: RELEASE_3_22
RemoteSha: 6417179adc2a872f41ebc4379ed620781532d1a7
NeedsCompilation: no
Packaged: 2025-11-11 20:57:14 UTC; root
Built: R 4.5.2; ; 2025-11-11 20:59:04 UTC; windows
