Package: HiTC
Type: Package
Title: High Throughput Chromosome Conformation Capture analysis
Description: The HiTC package was developed to explore high-throughput
        'C' data such as 5C or Hi-C. Dedicated R classes as well as
        standard methods for quality controls, normalization,
        visualization, and further analysis are also provided.
Version: 1.54.0
Date: 2025-07-22
Depends: R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports: Biostrings, graphics, grDevices, rtracklayer, RColorBrewer,
        Matrix, parallel, Seqinfo
Suggests: BiocStyle, HiCDataHumanIMR90, BSgenome.Hsapiens.UCSC.hg18
Author: Nicolas Servant
Maintainer: Nicolas Servant <nicolas.servant@curie.fr>
License: Artistic-2.0
Collate: AllGenerics.R HTCexp-class.R HTClist-class.R qualityControl.R
        mapC.R mapC_tracks.R binningC.R export.R import.R pca.R
        normalize_5C.R normalize_hiC.R tads.R deprecated.R
LazyLoad: yes
biocViews: Sequencing, HighThroughputSequencing, HiC
Packaged: 2025-11-11 19:51:34 UTC; root
InstallableEverywhere: yes
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:10:49 UTC
RemoteUrl: https://github.com/bioc/HiTC
RemoteRef: RELEASE_3_22
RemoteSha: f8056e1a9a8e1fa2f63299f48a400a8bf6a489d7
Built: R 4.5.2; ; 2025-11-11 19:57:55 UTC; windows
