# HiCaptuRe: Manipulating and integrating Capture Hi-C data

## Documentation for package ‘HiCaptuRe’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

annotate_interactions | Annotates HiCaptuRe object from load_interactions
digest_genome | Digest genome for a specific restriction enzyme
distance_summary | Computes the number of interactions by distance
export_interactions | Export interactions in the desired output format
getByBaits | Internal functions to access data held in a HiCaptuRe object.
getByBaits-method | Internal functions to access data held in a HiCaptuRe object.
getByRegions | Internal functions to access data held in a HiCaptuRe object.
getByRegions-method | Internal functions to access data held in a HiCaptuRe object.
getParameters | Internal functions to access data held in a HiCaptuRe object.
getParameters-method | Internal functions to access data held in a HiCaptuRe object.
getters | Internal functions to access data held in a HiCaptuRe object.
HiCaptuRe-class | HiCaptuRe Class
interactionsByBaits | Filters HiCaptuRe object by baits
interactionsByRegions | Filters HiCaptuRe object by overlaping regions
intersect_interactions | Computes the intersect between a list of interactions objects
load_interactions | Loads interaction file into GenomicInteractions Object
peakmatrix2list | Creates a list of HiCaptuRe objects based on a peakmatrix
plot_distance_summary | Generate the plot based on distance output