Package: HIPPO
Type: Package
Title: Heterogeneity-Induced Pre-Processing tOol
Version: 1.22.0
Authors@R: c(
  person(given = 'Tae', family = 'Kim', email = 'tk382@uchicago.edu', role = c('aut', 'cre')),
  person(given = 'Mengjie', family = 'Chen', email = 'mengjiechen@uchicago.edu', role = 'aut')
  )
Description: For scRNA-seq data, it selects features and clusters the
        cells simultaneously for single-cell UMI data. It has a novel
        feature selection method using the zero inflation instead of
        gene variance, and computationally faster than other existing
        methods since it only relies on PCA+Kmeans rather than
        graph-clustering or consensus clustering.
License: GPL (>=2)
Depends: R (>= 3.6.0)
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/tk382/HIPPO
BugReports: https://github.com/tk382/HIPPO/issues
Imports: ggplot2, graphics, stats, reshape2, gridExtra, Rtsne, umap,
        dplyr, rlang, magrittr, irlba, Matrix, SingleCellExperiment,
        ggrepel
RoxygenNote: 7.1.0
biocViews: Sequencing, SingleCell, GeneExpression,
        DifferentialExpression, Clustering
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev python3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:57:56 UTC
RemoteUrl: https://github.com/bioc/HIPPO
RemoteRef: RELEASE_3_22
RemoteSha: d76a6fb0ba2321a42c4951909bcce07d156d8879
NeedsCompilation: no
Packaged: 2025-11-11 19:40:55 UTC; root
Author: Tae Kim [aut, cre],
  Mengjie Chen [aut]
Maintainer: Tae Kim <tk382@uchicago.edu>
Built: R 4.5.2; ; 2025-11-11 19:42:53 UTC; windows
