bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
ed8148927927b03e10441cdd36f9a510 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
223f968b07e69fd824a21757758a61d3 *Meta/Rd.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
da997bd521165af972389945d2bd117b *Meta/hsearch.rds
0ece479fbc21567a4b4f0e0b4befad15 *Meta/links.rds
ebe39f06cbcae08f53b9b980d3af4cc2 *Meta/nsInfo.rds
c537633caedd0687839b0f7fd5f5dc9e *Meta/package.rds
a00ba99380b07521260769a46f9d8651 *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
c81905d4a08d014e2d2103b55c974dae *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
88718e69e9bb945bb0122b56dda518fd *R/GenomicAlignments.rdb
954c904b10bb3c4ca414ad317ca88973 *R/GenomicAlignments.rdx
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6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
ac5ef374b8ccf331533fc06730dcb8db *doc/GenomicAlignmentsIntroduction.pdf
e67d3665e733ff5e39e4bfca86f02556 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
d0126817e4092bbdf808bfbae2d165a3 *doc/OverlapEncodings.pdf
ce6b7e63648a74109c4e351265c9eb26 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
5caa5a91de8f158b86a6b59e4b951e3a *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
459876f6a6baca934fcf6c9af7a5b17e *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
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1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
5e6a125142e9765f74990422dbdc0b3c *help/GenomicAlignments.rdb
7799e630a491ff40c86409a178c87c1a *help/GenomicAlignments.rdx
3a92910c251585c3f45a861c330ce0f6 *help/aliases.rds
7573f0ee56f844af16cd4a6e6aaa7c9f *help/paths.rds
1fdb1a3232bc2e64859cefb573aa6716 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
cdc95524bae911196e2e294d805b0d47 *libs/x64/GenomicAlignments.dll
89b6bd9773df9d589810b5ae97270834 *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
