Package: EnrichmentBrowser
Version: 2.40.0
Date: 2025-09-14
Title: Seamless navigation through combined results of set-based and
        network-based enrichment analysis
Authors@R: c(
    person("Ludwig", "Geistlinger", role= c("aut", "cre"),
           email = "ludwig.geistlinger@gmail.com"),
    person("Gergely", "Csaba", role = "aut"),
    person("Mara", "Santarelli", role="ctb"),
    person("Mirko", "Signorelli", role="ctb"),
    person("Rohit","Satyam", role="ctb"),
    person("Marcel", "Ramos", role = "ctb"),
    person("Levi","Waldron", role="ctb"),
    person("Ralf","Zimmer", role="aut"))
Depends: SummarizedExperiment, graph
Imports: AnnotationDbi, BiocFileCache, BiocManager, GSEABase, GO.db,
        KEGGREST, KEGGgraph, Rgraphviz, S4Vectors, SPIA, edgeR,
        graphite, hwriter, limma, methods, pathview, safe
Suggests: ALL, BiocStyle, ComplexHeatmap, DESeq2, ReportingTools,
        airway, biocGraph, hgu95av2.db, geneplotter, knitr, msigdbr,
        rmarkdown, statmod
Description: The EnrichmentBrowser package implements essential
        functionality for the enrichment analysis of gene expression
        data. The analysis combines the advantages of set-based and
        network-based enrichment analysis in order to derive
        high-confidence gene sets and biological pathways that are
        differentially regulated in the expression data under
        investigation. Besides, the package facilitates the
        visualization and exploration of such sets and pathways.
License: Artistic-2.0
BugReports: https://github.com/lgeistlinger/EnrichmentBrowser/issues
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncology, Microarray, RNASeq, GeneExpression,
        DifferentialExpression, Pathways, GraphAndNetwork, Network,
        GeneSetEnrichment, NetworkEnrichment, Visualization,
        ReportWriting
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:21:30 UTC
RemoteUrl: https://github.com/bioc/EnrichmentBrowser
RemoteRef: RELEASE_3_22
RemoteSha: 2118f0cbc833cd9cabee8a00ee291990eac3f433
NeedsCompilation: no
Packaged: 2025-11-11 14:19:38 UTC; root
Author: Ludwig Geistlinger [aut, cre],
  Gergely Csaba [aut],
  Mara Santarelli [ctb],
  Mirko Signorelli [ctb],
  Rohit Satyam [ctb],
  Marcel Ramos [ctb],
  Levi Waldron [ctb],
  Ralf Zimmer [aut]
Maintainer: Ludwig Geistlinger <ludwig.geistlinger@gmail.com>
Built: R 4.5.2; ; 2025-11-11 14:30:46 UTC; windows
