Package: EnhancedVolcano
Type: Package
Title: Publication-ready volcano plots with enhanced colouring and
        labeling
Version: 1.28.2
Authors@R: c(
    person("Kevin", "Blighe", role = c("aut")),
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com", role = c("cre", "ctb"), comment = c(ORCID = "0000-0002-0780-6248")),
    person("Sharmila", "Rana", role = c("aut")),
    person("Emir", "Turkes", role = c("ctb")),
    person("Benjamin", "Ostendorf", role = c("ctb")),
    person("Andrea", "Grioni", role = c("ctb")),
    person("Myles", "Lewis", role = c("aut")))
Maintainer: Jared Andrews <jared.andrews07@gmail.com>
Description: Volcano plots represent a useful way to visualise the
        results of differential expression analyses. Here, we present a
        highly-configurable function that produces publication-ready
        volcano plots. EnhancedVolcano will attempt to fit as many
        point labels in the plot window as possible, thus avoiding
        'clogging' up the plot with labels that could not otherwise
        have been read. Other functionality allows the user to identify
        up to 4 different types of attributes in the same plot space
        via colour, shape, size, and shade parameter configurations.
License: GPL-3
Encoding: UTF-8
Depends: ggplot2, ggrepel
Imports: methods, scales, grid, grDevices
Suggests: RUnit, ggrastr, BiocGenerics, knitr, DESeq2, pasilla, airway,
        org.Hs.eg.db, gridExtra, magrittr, rmarkdown
URL: https://github.com/kevinblighe/EnhancedVolcano
biocViews: RNASeq, GeneExpression, Transcription,
        DifferentialExpression, ImmunoOncology
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-12-03 06:20:01 UTC
RemoteUrl: https://github.com/bioc/EnhancedVolcano
RemoteRef: RELEASE_3_22
RemoteSha: dae20c75382d8a65a781bc9ae5fbe6a756401e86
NeedsCompilation: no
Packaged: 2025-12-03 10:12:42 UTC; root
Author: Kevin Blighe [aut],
  Jared Andrews [cre, ctb] (ORCID:
    <https://orcid.org/0000-0002-0780-6248>),
  Sharmila Rana [aut],
  Emir Turkes [ctb],
  Benjamin Ostendorf [ctb],
  Andrea Grioni [ctb],
  Myles Lewis [aut]
Built: R 4.5.2; ; 2025-12-03 10:15:44 UTC; windows
