Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.38.0
Authors@R: 
        c(person(given="Monther", family="Alhamdoosh", role=c("aut", "cre"),
                email="m.hamdoosh@gmail.com"),
          person(given="Luyi", family="Tian", role=c("aut")),
          person(given="Milica", family="Ng", role=c("aut")),
          person("Matthew", "Ritchie",role=c("ctb"),
                    email="mritchie@wehi.edu.au"))
Description: This package implements the Ensemble of Gene Set
        Enrichment Analyses (EGSEA) method for gene set testing. EGSEA
        algorithm utilizes the analysis results of twelve prominent GSE
        algorithms in the literature to calculate collective
        significance scores for each gene set.
biocViews: ImmunoOncology, DifferentialExpression, GO, GeneExpression,
        GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
        OneChannel, Pathways, RNASeq, Sequencing, Software,
        SystemsBiology, TwoChannel,Metabolomics, Proteomics, KEGG,
        GraphAndNetwork, GeneSignaling, GeneTarget, NetworkEnrichment,
        Network, Classification
Depends: R (>= 4.3.0), Biobase, gage (>= 2.14.4), AnnotationDbi, topGO
        (>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0), globaltest (>= 5.18.0),
        limma (>= 3.20.9), edgeR (>= 3.6.8), HTMLUtils (>= 0.1.5),
        hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0),
        safe (>= 3.4.0), stringi (>= 0.5.0), parallel, stats, metap,
        grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db,
        org.Rn.eg.db, RColorBrewer, methods, EGSEAdata (>= 1.3.1),
        htmlwidgets, plotly, DT
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Encoding: UTF-8
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/pak/sysreqs: libfftw3-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:32:11 UTC
RemoteUrl: https://github.com/bioc/EGSEA
RemoteRef: RELEASE_3_22
RemoteSha: 1a8a16123af97cd09dc99fbeb8d7690692fb0f71
Packaged: 2025-11-11 20:25:20 UTC; root
Author: Monther Alhamdoosh [aut, cre],
  Luyi Tian [aut],
  Milica Ng [aut],
  Matthew Ritchie [ctb]
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Built: R 4.5.2; ; 2025-11-12 03:19:29 UTC; windows
