Package: DEWSeq
Type: Package
Title: Differential Expressed Windows Based on Negative Binomial
        Distribution
Version: 1.24.0
Authors@R: 
    c(person("Sudeep","Sahadevan",email= "sahadeva@embl.de",role="aut"), 
    person("Thomas","Schwarzl",email="schwarzl@embl.de",role="aut"),
    person("bioinformatics team","Hentze",email="biohentze@embl.de",role=c("aut","cre")))
Description: DEWSeq is a sliding window approach for the analysis of
        differentially enriched binding regions eCLIP or iCLIP next
        generation sequencing data.
Imports: BiocGenerics, data.table(>= 1.11.8), Seqinfo, GenomicRanges,
        methods, S4Vectors, SummarizedExperiment, stats, utils
Depends: R(>= 4.0.0), R.utils, DESeq2, BiocParallel
Suggests: knitr, tidyverse, rmarkdown, testthat, BiocStyle, IHW
VignetteBuilder: knitr
biocViews: Sequencing, GeneRegulation, FunctionalGenomics,
        DifferentialExpression
License: LGPL (>= 3)
URL: https://github.com/EMBL-Hentze-group/DEWSeq/
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.2
BugReports: https://github.com/EMBL-Hentze-group/DEWSeq/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:55:18 UTC
RemoteUrl: https://github.com/bioc/DEWSeq
RemoteRef: RELEASE_3_22
RemoteSha: 02e5ed4dcb3d4468dd525e96a9c760344e1851b6
NeedsCompilation: no
Packaged: 2025-11-11 14:01:59 UTC; root
Author: Sudeep Sahadevan [aut],
  Thomas Schwarzl [aut],
  bioinformatics team Hentze [aut, cre]
Maintainer: bioinformatics team Hentze <biohentze@embl.de>
Built: R 4.5.2; ; 2025-11-11 14:10:16 UTC; windows
