Package: CaMutQC
Type: Package
Title: An R Package for Comprehensive Filtration and Selection of
        Cancer Somatic Mutations
Version: 1.6.0
Authors@R: c(person(given = "Xin", family = "Wang", 
                     role = c("aut", "cre"),
                     email = "sylviawang555@gmail.com",
                     comment = c(ORCID = "0000-0002-6072-599X")))
Description: CaMutQC is able to filter false positive mutations
        generated due to technical issues, as well as to select
        candidate cancer mutations through a series of well-structured
        functions by labeling mutations with various flags. And a
        detailed and vivid filter report will be offered after
        completing a whole filtration or selection section. Also,
        CaMutQC integrates serveral methods and gene panels for Tumor
        Mutational Burden (TMB) estimation.
biocViews: Software, QualityControl, GeneTarget
Encoding: UTF-8
Suggests: knitr, rmarkdown, BiocStyle, shiny
VignetteBuilder: knitr
RoxygenNote: 7.3.3
NeedsCompilation: no
BugReports: https://github.com/likelet/CaMutQC/issues
URL: https://github.com/likelet/CaMutQC
Depends: R (>= 4.4.0)
Imports: ggplot2, dplyr, org.Hs.eg.db, vcfR, clusterProfiler, stringr,
        DT, MesKit, maftools, data.table, utils, stats, methods, tidyr
License: GPL-3
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev perl xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:28:46 UTC
RemoteUrl: https://github.com/bioc/CaMutQC
RemoteRef: RELEASE_3_22
RemoteSha: 77bf43324cdfd86ad213756ed63f90be7d136d4d
Packaged: 2025-11-16 07:39:37 UTC; root
Author: Xin Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-6072-599X>)
Maintainer: Xin Wang <sylviawang555@gmail.com>
Built: R 4.5.2; ; 2025-11-16 07:42:27 UTC; windows
