Package: BioNAR
Title: Biological Network Analysis in R
Version: 1.12.2
Authors@R: c(
    person("Colin", "Mclean", 
        email="Colin.D.Mclean@ed.ac.uk", role="aut"), 
    person("Anatoly", "Sorokin", 
        email="lptolik@gmail.com", role=c("aut", "cre")), 
    person("Oksana", "Sorokina", 
        email="oksana.sorokina@ed.ac.uk", role="aut"),
    person("J. Douglas", "Armstrong", 
        email="Douglas.Armstrong@ed.ac.uk", role = c("aut","fnd")),
    person("T. Ian", "Simpson", 
        email="Ian.Simpson@ed.ac.uk", role = c("ctb","fnd")) )
Description: the R package BioNAR, developed to step by step analysis
        of PPI network. The aim is to quantify and rank each protein’s
        simultaneous impact into multiple complexes based on network
        topology and clustering. Package also enables estimating of
        co-occurrence of diseases across the network and specific
        clusters pointing towards shared/common mechanisms.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 3.5.0), igraph (>= 2.0.1.1), poweRlaw, latex2exp,
        RSpectra, Rdpack
Imports: stringr, viridis, fgsea, grid, methods, AnnotationDbi, dplyr,
        GO.db, org.Hs.eg.db (>= 3.19.1), rSpectral, WGCNA, ggplot2,
        ggrepel, minpack.lm, cowplot, data.table, scales, stats, Matrix
RdMacros: Rdpack
Suggests: knitr, BiocStyle, magick, rmarkdown, igraphdata, testthat (>=
        3.0.0), vdiffr, devtools, pander, plotly, randomcoloR
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/lptolik/BioNAR/issues/
biocViews: Software, GraphAndNetwork, Network
LazyData: true
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-11-20 15:59:10 UTC
RemoteUrl: https://github.com/bioc/BioNAR
RemoteRef: RELEASE_3_22
RemoteSha: d75d17740b40d415a31b9c44984c814b74250590
NeedsCompilation: no
Packaged: 2025-11-24 16:08:26 UTC; root
Author: Colin Mclean [aut],
  Anatoly Sorokin [aut, cre],
  Oksana Sorokina [aut],
  J. Douglas Armstrong [aut, fnd],
  T. Ian Simpson [ctb, fnd]
Maintainer: Anatoly Sorokin <lptolik@gmail.com>
Built: R 4.5.2; ; 2025-11-24 16:11:49 UTC; windows
