Package: ADaCGH2
Version: 2.50.0
Date: 2025-04-08
Title: Analysis of big data from aCGH experiments using parallel
        computing and ff objects
Author: Ramon Diaz-Uriarte <rdiaz02@gmail.com> and Oscar M. Rueda
        <rueda.om@gmail.com>. Wavelet-based aCGH smoothing code from Li
        Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>.
        Imagemap code from Barry Rowlingson
        <B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez
        Ben-Yaacov; downloaded from
        <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>.
        Code from ffbase <https://github.com/edwindj/ffbase> by Edwin
        de Jonge <edwindjonge@gmail.com>, Jan Wijffels, Jan van der
        Laan.
Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com>
Depends: R (>= 3.2.0), parallel, ff
Imports: bit, DNAcopy, tilingArray, waveslim, cluster, aCGH
Suggests: CGHregions, Cairo, limma
Enhances: Rmpi, GLAD
Description: Analysis and plotting of array CGH data. Allows usage of
        Circular Binary Segementation, wavelet-based smoothing (both as
        in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM,
        GLAD, CGHseg. Most computations are parallelized (either via
        forking or with clusters, including MPI and sockets clusters)
        and use ff for storing data.
biocViews: Microarray, CopyNumberVariants
LazyLoad: Yes
License: GPL (>= 3)
URL: https://github.com/rdiaz02/adacgh2
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:06:05 UTC
RemoteUrl: https://github.com/bioc/ADaCGH2
RemoteRef: RELEASE_3_22
RemoteSha: 62d279406d9ecad10be80995b3360693936e6294
NeedsCompilation: yes
Packaged: 2025-11-11 12:41:49 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 12:44:42 UTC; windows
Archs: x64
