Package: topGO
Type: Package
Title: Enrichment Analysis for Gene Ontology
Version: 2.62.0
Date: 2025-06-23
Authors@R: 
  c(
    person(
      given = "Adrian", family = "Alexa", role = c("aut"),
      email = "adrian.alexa@gmail.com"
    ),
    person(
      given = "Jörg", family = "Rahnenführer", role = c("aut")
    ),
    person(
      given = "Federico", family = "Marini", role = c("cre"), 
      email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
    )
  )
Description: 
  topGO package provides tools for testing GO terms while accounting for the 
  topology of the GO graph. Different test statistics and different methods 
  for eliminating local similarities and dependencies between GO terms can be
  implemented and applied.
License: LGPL
Encoding: UTF-8
Depends: R (>= 2.10.0), methods, BiocGenerics (>= 0.13.6), graph (>=
        1.14.0), Biobase (>= 2.0.0), GO.db (>= 2.3.0), AnnotationDbi
        (>= 1.7.19), SparseM (>= 0.73)
Imports: lattice, matrixStats, DBI
Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, multtest,
        Rgraphviz, globaltest, knitr, BiocStyle, rmarkdown
Collate: AllClasses.R topGOmethods.R topGOgraph.R topGOalgo.R
        topGOfunctions.R topGOannotations.R topGOtests.R topGOviz.R
        zzz.R
VignetteBuilder: knitr
URL: https://github.com/federicomarini/topGO
BugReports: https://github.com/federicomarini/topGO/issues
biocViews: GeneExpression, Transcriptomics, GeneSetEnrichment, GO,
        Annotation, Pathways, SystemsBiology, Microarray, Sequencing,
        Visualization, Software
git_url: https://git.bioconductor.org/packages/topGO
git_branch: RELEASE_3_22
git_last_commit: 07c1375
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 05:47:58 UTC; biocbuild
Author: Adrian Alexa [aut],
  Jörg Rahnenführer [aut],
  Federico Marini [cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.5.1; ; 2025-10-30 12:44:15 UTC; unix
