Package: smoppix
Type: Package
Title: Analyze Single Molecule Spatial Omics Data Using the
        Probabilistic Index
Version: 1.2.3
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Test for univariate and bivariate spatial patterns in
        spatial omics data with single-molecule resolution. The tests
        implemented allow for analysis of nested designs and are
        automatically calibrated to different biological specimens.
        Tests for aggregation, colocalization, gradients and vicinity
        to cell edge or centroid are provided.
License: GPL-2
Encoding: UTF-8
Imports: spatstat.geom(>=
        3.2.0),spatstat.random,methods,BiocParallel,SummarizedExperiment,SpatialExperiment,Rdpack,stats,utils,lmerTest,lme4,ggplot2,graphics,grDevices,Rcpp
        (>= 1.0.11),spatstat.model,openxlsx,Rfast,reformulas,mgcv
Suggests:
        testthat,rmarkdown,knitr,DropletUtils,polyCub,RImageJROI,sp,ape,htmltools,funkycells,glmnet,doParallel
RdMacros: Rdpack
RoxygenNote: 7.3.3
biocViews: Transcriptomics, Spatial, SingleCell
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
BugReports: https://github.com/sthawinke/smoppix/issues
URL: https://github.com/sthawinke/smoppix
LinkingTo: Rcpp
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-03-17 14:13:04 UTC
RemoteUrl: https://github.com/bioc/smoppix
RemoteRef: RELEASE_3_22
RemoteSha: 98a1a08e00d3a13673aaffb70a392ca5fcc6399e
NeedsCompilation: yes
Packaged: 2026-03-18 06:11:57 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.5.3; x86_64-apple-darwin20; 2026-03-18 06:15:17 UTC; unix
