Package: scafari
Type: Package
Title: Analysis of scDNA-seq data
Version: 1.0.0
Authors@R: 
	person("Sophie", "Wind", , 
	 email = "sophie.wind@uni-muenster.de", 
	 role = c("aut", "cre"),
	 comment=c(ORCID="0009-0002-1174-8201"))
Description: Scafari is a Shiny application designed for the analysis of single-cell DNA sequencing (scDNA-seq) data provided in .h5 file format. The analysis process is structured into the four key steps "Sequencing", "Panel", "Variants", and "Explore Variants". It supports various analyses and visualizations.
Depends: R (>= 4.5.0)
License: LGPL-3
Encoding: UTF-8
Imports: magrittr, shiny, shinycssloaders, DT, dplyr, waiter, ggplot2,
        tibble, stringr, reshape2, shinyjs, shinyBS, shinycustomloader,
        factoextra, markdown, plotly, ggbio, GenomicRanges, rhdf5,
        ComplexHeatmap, biomaRt, org.Hs.eg.db, SummarizedExperiment,
        SingleCellExperiment, S4Vectors, parallel, httr, jsonlite,
        scales, tidyr, txdbmaker, circlize, R.utils, dbscan, igraph,
        RANN
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
biocViews: Software, ShinyApps, SingleCell, Sequencing
BugReports: https://github.com/sophiewind/scafari/issues
URL: https://github.com/sophiewind/scafari
RoxygenNote: 7.3.2
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/scafari
git_branch: RELEASE_3_22
git_last_commit: 31af230
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 05:19:38 UTC; biocbuild
Author: Sophie Wind [aut, cre] (ORCID: <https://orcid.org/0009-0002-1174-8201>)
Maintainer: Sophie Wind <sophie.wind@uni-muenster.de>
Built: R 4.5.1; ; 2025-10-30 12:37:02 UTC; unix
