Package: scMitoMut
Title: Single-cell Mitochondrial Mutation Analysis Tool
Version: 1.6.0
Authors@R: c(
  person("Wenjie", "Sun", email = "sunwjie@gmail.com", role = c("cre", "aut"), comment=c(ORCID="0000-0002-3100-2346")),
  person("Leila", "Perie", email = "leila.perie@curie.fr", role = "ctb")
  )
Description: 
    This package is designed for calling lineage-informative mitochondrial
    mutations using single-cell sequencing data, such as scRNASeq and scATACSeq
    (preferably the latter due to RNA editing issues). It includes functions for
    mutation calling and visualization. Mutation calling is done using
    beta-binomial distribution.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3.0)
Imports: data.table, Rcpp, magrittr, plyr, stringr, utils, stats,
        methods, ggplot2, pheatmap, RColorBrewer, rhdf5, readr,
        parallel, grDevices
LinkingTo: Rcpp, RcppArmadillo
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, VGAM,
        R.utils
Config/testthat/edition: 3
BugReports: https://github.com/wenjie1991/scMitoMut/issues
URL: http://github.com/wenjie1991/scMitoMut
VignetteBuilder: knitr
NeedsCompilation: yes
biocViews: Preprocessing, Sequencing, SingleCell
git_url: https://git.bioconductor.org/packages/scMitoMut
git_branch: RELEASE_3_22
git_last_commit: ed0def1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 05:20:30 UTC; biocbuild
Author: Wenjie Sun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3100-2346>),
  Leila Perie [ctb]
Maintainer: Wenjie Sun <sunwjie@gmail.com>
Built: R 4.5.1; x86_64-apple-darwin20; 2025-10-30 12:38:06 UTC; unix
