Package: msgbsR
Type: Package
Title: msgbsR: methylation sensitive genotyping by sequencing (MS-GBS)
        R functions
Version: 1.34.0
Date: 2025-07-24
Author: Benjamin Mayne
Maintainer: Benjamin Mayne <benjamin.mayne@adelaide.edu.au>
Depends: R (>= 3.5.0), GenomicRanges, methods
Imports: BSgenome, easyRNASeq, edgeR, GenomicAlignments,
        GenomicFeatures, Seqinfo, ggbio, ggplot2, IRanges, parallel,
        plyr, Rsamtools, R.utils, stats, SummarizedExperiment,
        S4Vectors, utils
Suggests: roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
biocViews: ImmunoOncology, DifferentialMethylation, DataImport,
        Epigenetics, MethylSeq
Description: Pipeline for the anaysis of a MS-GBS experiment.
License: GPL-2
LazyLoad: yes
Collate: 'msgbsR.R' 'rawCounts.R' 'checkCuts.R' 'plotCounts.R'
        'diffMeth.R' 'plotCircos.R'
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/msgbsR
git_branch: RELEASE_3_22
git_last_commit: 1016b01
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:36:06 UTC; biocbuild
Built: R 4.5.1; ; 2025-10-30 12:27:11 UTC; unix
