Package: geomeTriD
Type: Package
Title: A R/Bioconductor package for interactive 3D plot of epigenetic
        data or single cell data
Version: 1.4.1
Authors@R: c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: The geomeTriD (Three-Dimensional Geometry) Package provides interactive 3D visualization of chromatin structures using the WebGL-based 'three.js' (https://threejs.org/) or the rgl rendering library. It is designed to identify and explore spatial chromatin patterns within genomic regions. The package generates dynamic 3D plots and HTML widgets that integrate seamlessly with Shiny applications, enabling researchers to visualize chromatin organization, detect spatial features, and compare structural dynamics across different conditions and data types.
License: MIT + file LICENSE
Depends: R (>= 4.4.0)
Imports: aricode, BiocGenerics, Biostrings, clue, cluster, dbscan,
        future.apply, Seqinfo, GenomicRanges, graphics, grDevices,
        grid, htmlwidgets, igraph, InteractionSet, IRanges, MASS,
        Matrix, methods, plotrix, progressr, RANN, rgl, rjson,
        S4Vectors, scales, stats, trackViewer
Suggests: RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
        BSgenome.Hsapiens.UCSC.hg19, manipulateWidget, shiny,
        BiocStyle, knitr, rmarkdown, testthat
biocViews: Visualization
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/jianhong/geomeTriD
BugReports: https://github.com/jianhong/geomeTriD/issues
git_url: https://git.bioconductor.org/packages/geomeTriD
git_branch: RELEASE_3_22
git_last_commit: 82cdeb3
git_last_commit_date: 2025-11-24
Repository: Bioconductor 3.22
Date/Publication: 2025-11-24
NeedsCompilation: no
Packaged: 2025-11-25 00:46:45 UTC; biocbuild
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.5.2; ; 2025-11-25 19:23:45 UTC; unix
