Package: VegaMC
Type: Package
Title: VegaMC: A Package Implementing a Variational Piecewise Smooth
        Model for Identification of Driver Chromosomal Imbalances in
        Cancer
Version: 3.48.0
Date: 2015-03-03
Author: S. Morganella and M. Ceccarelli
Maintainer: Sandro Morganella <morganellaalx@gmail.com>
Description: This package enables the detection of driver chromosomal
        imbalances including loss of heterozygosity (LOH) from array
        comparative genomic hybridization (aCGH) data. VegaMC performs
        a joint segmentation of a dataset and uses a statistical
        framework to distinguish between driver and passenger mutation.
        VegaMC has been implemented so that it can be immediately
        integrated with the output produced by PennCNV tool. In
        addition, VegaMC produces in output two web pages that allows a
        rapid navigation between both the detected regions and the
        altered genes. In the web page that summarizes the altered
        genes, the link to the respective Ensembl gene web page is
        reported.
License: GPL-2
Depends: R (>= 2.10.0), biomaRt, Biobase
Imports: methods
LazyLoad: yes
biocViews: aCGH, CopyNumberVariation
Packaged: 2026-02-04 09:11:02 UTC; root
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:10:40 UTC
RemoteUrl: https://github.com/bioc/VegaMC
RemoteRef: RELEASE_3_22
RemoteSha: 57a07b60bbf6b81e34c6491d1327709aebde04ee
NeedsCompilation: yes
Built: R 4.5.2; x86_64-apple-darwin20; 2026-02-04 09:14:15 UTC; unix
