Package: RiboDiPA
Type: Package
Title: Differential pattern analysis for Ribo-seq data
Date: 2024-03-19
Version: 1.18.0
Authors@R: 
    c(person(given = "Keren",
             family = "Li",
             role = c("aut"),
             email = "keren.li@northwestern.edu"),
      person(given = "Matt",
             family = "Hope",
             role = "aut"),
      person(given = "Xiaozhong",
             family = "Wang",
             role = "aut"),
      person(given = "Ji-Ping",
             family = "Wang",
             role = c("aut","cre"),
             email = "jzwang@northwestern.edu"))
Description: This package performs differential pattern analysis for
        Ribo-seq data. It identifies genes with significantly different
        patterns in the ribosome footprint between two conditions.
        RiboDiPA contains five major components including bam file
        processing, P-site mapping, data binning, differential pattern
        analysis and footprint visualization.
License: LGPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 1.0.2), graphics, stats, data.table, elitism,
        methods, S4Vectors, IRanges, GenomicRanges, matrixStats,
        reldist, doParallel, foreach, parallel, qvalue, DESeq2,
        ggplot2, BiocFileCache, BiocGenerics, txdbmaker
LinkingTo: Rcpp
Depends: R (>= 4.1), Rsamtools, GenomicFeatures, GenomicAlignments
NeedsCompilation: yes
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: RiboSeq, GeneExpression, GeneRegulation,
        DifferentialExpression, Sequencing, Coverage, Alignment,
        RNASeq, ImmunoOncology, QualityControl, DataImport, Software,
        Normalization
git_url: https://git.bioconductor.org/packages/RiboDiPA
git_branch: master
git_last_commit: 7a819c5
git_last_commit_date: 2021-05-19
Packaged: 2026-01-30 08:35:19 UTC; root
Author: Keren Li [aut], Matt Hope [aut], Xiaozhong Wang [aut], Ji-Ping
        Wang [aut, cre]
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:05:49 UTC
RemoteUrl: https://github.com/bioc/RiboDiPA
RemoteRef: RELEASE_3_22
RemoteSha: 44db22fc3f9315652255f446495e888b3f5eb14e
Built: R 4.5.2; x86_64-apple-darwin20; 2026-01-30 08:39:37 UTC; unix
