MultiAssayExperiment-package	MultiAssayExperiment-package
$,MultiAssayExperiment-method	MultiAssayExperiment-methods
$<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
anyReplicated	MultiAssayExperiment-helpers
anyReplicated,MultiAssayExperiment-method	MultiAssayExperiment-helpers
assay,ANY,missing-method	ExperimentList-class
assay,ExperimentList,character-method	ExperimentList-class
assay,ExperimentList,missing-method	ExperimentList-class
assay,ExperimentList,numeric-method	ExperimentList-class
assay,MultiAssayExperiment,character-method	MultiAssayExperiment-class
assay,MultiAssayExperiment,missing-method	MultiAssayExperiment-class
assay,MultiAssayExperiment,numeric-method	MultiAssayExperiment-class
assays,ExperimentList-method	ExperimentList-class
assays,MultiAssayExperiment-method	MultiAssayExperiment-class
c,MultiAssayExperiment-method	MultiAssayExperiment-class
coerce,List,ExperimentList-method	ExperimentList-class
coerce,list,ExperimentList-method	ExperimentList-class
coerce,List,MultiAssayExperiment-method	MultiAssayExperiment-class
coerce,list,MultiAssayExperiment-method	MultiAssayExperiment-class
coerce,MultiAssayExperiment,MatchedAssayExperiment-method	MatchedAssayExperiment-class
coerce-ExperimentList	ExperimentList-class
coerce-MultiAssayExperiment	MultiAssayExperiment-class
colData,MultiAssayExperiment-method	MultiAssayExperiment-methods
colData<-,MultiAssayExperiment,ANY-method	MultiAssayExperiment-methods
colData<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-methods
colnames,ExperimentList-method	ExperimentList-class
colnames<-,MultiAssayExperiment,List-method	MultiAssayExperiment-methods
colnames<-,MultiAssayExperiment,list-method	MultiAssayExperiment-methods
complete.cases,MultiAssayExperiment-method	MultiAssayExperiment-helpers
DataFrame	reexports
dimnames,ExperimentList-method	ExperimentList-class
dimnames,MultiAssayExperiment-method	MultiAssayExperiment-class
drops	MultiAssayExperiment-methods
drops,MultiAssayExperiment-method	MultiAssayExperiment-methods
drops<-	MultiAssayExperiment-methods
drops<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
ExperimentList	ExperimentList
ExperimentList-class	ExperimentList-class
experiments	MultiAssayExperiment-methods
experiments,MultiAssayExperiment-method	MultiAssayExperiment-methods
experiments<-	MultiAssayExperiment-methods
experiments<-,MultiAssayExperiment,ExperimentList-method	MultiAssayExperiment-methods
experiments<-,MultiAssayExperiment,List-method	MultiAssayExperiment-methods
exportClass	MultiAssayExperiment-class
exportClass,MultiAssayExperiment-method	MultiAssayExperiment-class
getWithColData	MultiAssayExperiment-helpers
hasAssay	hasAssay
hasRowData	MultiAssayExperiment-helpers
hasRowData,ExperimentList-method	MultiAssayExperiment-helpers
hasRowData,MultiAssayExperiment-method	MultiAssayExperiment-helpers
hasRowRanges	MultiAssayExperiment-helpers
hasRowRanges,ExperimentList-method	MultiAssayExperiment-helpers
hasRowRanges,MultiAssayExperiment-method	MultiAssayExperiment-helpers
HDF5MultiAssayExperiment	HDF5MultiAssayExperiment
intersectByRowData	subsetBy
intersectByRowData,MultiAssayExperiment,character,character-method	subsetBy
intersectColumns	MultiAssayExperiment-helpers
intersectRows	MultiAssayExperiment-helpers
isEmpty,ExperimentList-method	ExperimentList-class
isEmpty,MultiAssayExperiment-method	MultiAssayExperiment-helpers
length,MultiAssayExperiment-method	MultiAssayExperiment-class
listToMap	mapToList
loadHDF5MultiAssayExperiment	HDF5MultiAssayExperiment
longForm,ANY-method	MultiAssayExperiment-helpers
longForm,ExperimentList-method	MultiAssayExperiment-helpers
longForm,MultiAssayExperiment-method	MultiAssayExperiment-helpers
longFormat	longFormat-defunct
longFormat,ANY-method	longFormat-defunct
longFormat,ExperimentList-method	longFormat-defunct
longFormat,MultiAssayExperiment-method	longFormat-defunct
longFormat-defunct	longFormat-defunct
makeHitList	MultiAssayExperiment-helpers
makeMatchList	MultiAssayExperiment-helpers
mapToList	mapToList
MatchedAssayExperiment	MatchedAssayExperiment-class
MatchedAssayExperiment-class	MatchedAssayExperiment-class
mergeReplicates	MultiAssayExperiment-helpers
mergeReplicates,ANY-method	MultiAssayExperiment-helpers
mergeReplicates,ExperimentList-method	ExperimentList-class
mergeReplicates,MultiAssayExperiment-method	MultiAssayExperiment-helpers
metadata,MultiAssayExperiment-method	MultiAssayExperiment-methods
metadata<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
miniACC	miniACC
MultiAssayExperiment	MultiAssayExperiment
MultiAssayExperiment-class	MultiAssayExperiment-class
MultiAssayExperiment-helpers	MultiAssayExperiment-helpers
MultiAssayExperiment-methods	MultiAssayExperiment-methods
MultiAssayExperimentToMAF	MultiAssayExperimentToMAF
names,MultiAssayExperiment-method	MultiAssayExperiment-class
names<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
prepMultiAssay	prepMultiAssay
reexports	reexports
renameColname	MultiAssayExperiment-helpers
renamePrimary	MultiAssayExperiment-helpers
replicated	MultiAssayExperiment-helpers
replicated,MultiAssayExperiment-method	MultiAssayExperiment-helpers
replicates	MultiAssayExperiment-helpers
replicates,MultiAssayExperiment-method	MultiAssayExperiment-helpers
rownames,ExperimentList-method	ExperimentList-class
sampleMap	MultiAssayExperiment-methods
sampleMap,MultiAssayExperiment-method	MultiAssayExperiment-methods
sampleMap<-	MultiAssayExperiment-methods
sampleMap<-,MultiAssayExperiment,ANY-method	MultiAssayExperiment-methods
sampleMap<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-methods
saveHDF5MultiAssayExperiment	HDF5MultiAssayExperiment
show,ExperimentList-method	ExperimentList-class
show,MultiAssayExperiment-method	MultiAssayExperiment-class
showReplicated	MultiAssayExperiment-helpers
showReplicated,MultiAssayExperiment-method	MultiAssayExperiment-helpers
splitAssays	MultiAssayExperiment-helpers
splitAssays,MultiAssayExperiment-method	MultiAssayExperiment-helpers
subset	subsetBy
subsetBy	subsetBy
subsetByAssay	subsetBy
subsetByAssay,ExperimentList-method	subsetBy
subsetByAssay,MultiAssayExperiment-method	subsetBy
subsetByColData	subsetBy
subsetByColData,MultiAssayExperiment,ANY-method	subsetBy
subsetByColData,MultiAssayExperiment,character-method	subsetBy
subsetByColumn	subsetBy
subsetByColumn,ExperimentList,List-method	subsetBy
subsetByColumn,ExperimentList,list-method	subsetBy
subsetByColumn,ExperimentList,logical-method	subsetBy
subsetByColumn,MultiAssayExperiment,ANY-method	subsetBy
subsetByRow	subsetBy
subsetByRow,ExperimentList,ANY-method	subsetBy
subsetByRow,ExperimentList,List-method	subsetBy
subsetByRow,ExperimentList,list-method	subsetBy
subsetByRow,ExperimentList,logical-method	subsetBy
subsetByRow,MultiAssayExperiment,ANY-method	subsetBy
subsetByRow,MultiAssayExperiment,List-method	subsetBy
subsetByRow,MultiAssayExperiment,list-method	subsetBy
subsetByRowData	subsetBy
subsetByRowData,MultiAssayExperiment,character,character-method	subsetBy
updateObject,MultiAssayExperiment-method	MultiAssayExperiment-class
upsetSamples	upsetSamples
wideFormat	MultiAssayExperiment-helpers
[,MultiAssayExperiment,ANY,ANY,ANY-method	subsetBy
[,MultiAssayExperiment,ANY-method	subsetBy
[<-,MultiAssayExperiment,ANY,ANY,ANY-method	subsetBy
[[,MultiAssayExperiment,ANY,ANY-method	subsetBy
[[<-,MultiAssayExperiment,ANY,ANY-method	subsetBy
