Package: LipidTrend
Title: LipidTrend: Analysis and Visualization of Lipid Feature
        Tendencies
Version: 1.0.0
Authors@R: c(
    person("Wei-Chung", "Cheng", email="chenglabomics@gmail.com", 
    role = c("aut","cre","cph"), comment = c(ORCID = "0000-0002-1229-4857")),
    person("Chia-Hsin ", "Liu", role = c("aut", "ctb")),
    person("Pei-Chun", "Shen", role = c("aut", "ctb")),
    person("Wen-Jen", "Lin", role = c("aut","ctb")),
    person("Hung-Ching", "Chang", role = c("aut","ctb")),
    person("Meng-Hsin", "Tsai", role = c("aut","ctb"))
    )
Description: 
    "LipidTrend" is an R package that implements a permutation-based statistical 
    test to identify significant differences in lipidomic features between 
    groups. The test incorporates Gaussian kernel smoothing of region statistics 
    to improve stability and accuracy, particularly when dealing with small 
    sample sizes. This package also includes two plotting functions for 
    visualizing significant tendencies in 1D and 2D feature data, respectively.
License: MIT + file LICENSE
URL: https://github.com/BioinfOMICS/LipidTrend
BugReports: https://github.com/BioinfOMICS/LipidTrend/issues
LazyData: FALSE
biocViews: Software, Lipidomics, StatisticalMethod,
        DifferentialExpression, Visualization
Depends: R (>= 4.5.0)
Imports: dplyr, ggnewscale, ggplot2, magrittr, methods, rlang,
        SummarizedExperiment, MKmisc, matrixTests
Suggests: BiocStyle, devtools, knitr, roxygen2, rmarkdown, testthat (>=
        3.0.0), S4Vectors,
Enhances: data.table,
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Collate: 'allClasses.R' 'allGenerics.R' 'analyzeLipidRegion.R' 'data.R'
        'globals.R' 'LipidTrend.R' 'plotRegion1D.R' 'plotRegion2D.R'
        'utils.R'
git_url: https://git.bioconductor.org/packages/LipidTrend
git_branch: RELEASE_3_22
git_last_commit: 85ac973
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:13:55 UTC; biocbuild
Author: Wei-Chung Cheng [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-1229-4857>),
  Chia-Hsin Liu [aut, ctb],
  Pei-Chun Shen [aut, ctb],
  Wen-Jen Lin [aut, ctb],
  Hung-Ching Chang [aut, ctb],
  Meng-Hsin Tsai [aut, ctb]
Maintainer: Wei-Chung Cheng <chenglabomics@gmail.com>
Built: R 4.5.1; ; 2025-10-30 12:22:50 UTC; unix
