# Methods for BCR single-cell embedding

## Documentation for package ‘Ibex’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Ibex-package | Ibex: Methods for BCR single-cell embedding
combineExpandedBCR | combineBCR for CDR1/2/3 sequences
CoNGAfy | Reduce a Single-Cell Object to Representative Cells
filter.cells | Filter Single-Cell Data Based on CDR3 Sequences
Ibex | Ibex: Methods for BCR single-cell embedding
ibex_example | A SingleCellExperiment object with 200 randomly-sampled B cells with BCR sequences from the 10x Genomics 2k_BEAM-Ab_Mouse_HEL_5pv2 dataset.
Ibex_matrix | Ibex Matrix Interface
ibex_vdj | Full filtered_annotated_contig.csv from the 10x 2k_BEAM-Ab_Mouse_HEL_5pv2
runIbex | Ibex Single-Cell Calculation