EWCE-package	EWCE-package
add_res_to_merging_list	add_res_to_merging_list
assign_cores	assign_cores
bin_columns_into_quantiles	bin_columns_into_quantiles
bin_specificity_into_quantiles	bin_specificity_into_quantiles
bootstrap_enrichment_test	bootstrap_enrichment_test
bootstrap_plot	bootstrap_plot
bootstrap_plots_for_transcriptome	bootstrap_plots_for_transcriptome
calculate_meanexp_for_level	calculate_meanexp_for_level
calculate_specificity_for_level	calculate_specificity_for_level
cell_list_dist	cell_list_dist
check_annotLevels	check_annotLevels
check_args_for_bootstrap_plot_generation	check_args_for_bootstrap_plot_generation
check_bootstrap_args	check_bootstrap_args
check_controlled_args	check_controlled_args
check_ewce_expression_data_args	check_ewce_expression_data_args
check_ewce_genelist_inputs	check_ewce_genelist_inputs
check_full_results	check_full_results
check_generate_controlled_bootstrap_geneset	check_generate_controlled_bootstrap_geneset
check_group_name	check_group_name
check_nas	check_nas
check_numeric	check_numeric
check_percent_hits	check_percent_hits
check_sce	check_sce
check_species	check_species
compute_gene_counts	compute_gene_counts
compute_gene_scores	compute_gene_scores
controlled_geneset_enrichment	controlled_geneset_enrichment
convert_new_ewce_to_old	convert_new_ewce_to_old
convert_old_ewce_to_new	convert_old_ewce_to_new
create_background_multilist	create_background_multilist
create_list_network	create_list_network
ctd_to_sce	ctd_to_sce
delayedarray_normalize	delayedarray_normalize
drop_nonexpressed_cells	drop_nonexpressed_cells
drop_nonexpressed_genes	drop_nonexpressed_genes
drop_uninformative_genes	drop_uninformative_genes
dt_to_df	dt_to_df
EWCE	EWCE-package
ewce_expression_data	ewce_expression_data
ewce_plot	ewce_plot
example_bootstrap_results	example_bootstrap_results
example_transcriptome_results	example_transcriptome_results
extract_matrix	extract_matrix
filter_ctd_genes	filter_ctd_genes
filter_genes_without_1to1_homolog	filter_genes_without_1to1_homolog
filter_nonorthologs	filter_nonorthologs
filter_variance_quantiles	filter_variance_quantiles
fix_bad_hgnc_symbols	fix_bad_hgnc_symbols
fix_bad_mgi_symbols	fix_bad_mgi_symbols
fix_celltype_names	fix_celltype_names
fix_celltype_names_full_results	fix_celltype_names_full_results
generate_bootstrap_plots	generate_bootstrap_plots
generate_bootstrap_plots_for_transcriptome	generate_bootstrap_plots_for_transcriptome
generate_celltype_data	generate_celltype_data
generate_controlled_bootstrap_geneset	generate_controlled_bootstrap_geneset
get_celltype_table	get_celltype_table
get_ctd_levels	get_ctd_levels
get_ctd_matrix_names	get_ctd_matrix_names
get_exp_data_for_bootstrapped_genes	get_exp_data_for_bootstrapped_genes
get_sig_results	get_sig_results
get_summed_proportions	get_summed_proportions
is_32bit	is_32bit
is_celltypedataset	is_celltypedataset
is_ctd_standardised	is_ctd_standardised
is_delayed_array	is_delayed_array
is_matrix	is_matrix
is_sparse_matrix	is_sparse_matrix
list_species	list_species
load_rdata	load_rdata
max_ctd_depth	max_ctd_depth
merged_ewce	merged_ewce
merge_ctd	merge_ctd
merge_sce	merge_sce
merge_sce_list	merge_sce_list
merge_two_expfiles	merge_two_expfiles
messager	messager
message_parallel	message_parallel
myScalesComma	myScalesComma
plot_ctd	plot_ctd
plot_log_bootstrap_distributions	plot_log_bootstrap_distributions
plot_with_bootstrap_distributions	plot_with_bootstrap_distributions
prep.dendro	prep.dendro
prepare_genesize_control_network	prepare_genesize_control_network
prepare_tt	prepare_tt
prep_dendro	prep_dendro
report_dge	report_dge
report_results	report_results
run_deseq2	run_deseq2
run_limma	run_limma
run_mast	run_mast
sce_lists_apply	sce_lists_apply
sce_merged_apply	sce_merged_apply
sct_normalize	sct_normalize
standardise_ctd	standardise_ctd
theme_graph	theme_graph
to_dataframe	to_dataframe
to_delayed_array	to_delayed_array
to_sparse_matrix	to_sparse_matrix
