syntenet-package	syntenet-package
angiosperm_phylogeny	angiosperm_phylogeny
annotation	annotation
binarize_and_transpose	binarize_and_transpose
blast_list	blast_list
check_input	check_input
clusters	clusters
cluster_network	cluster_network
collapse_bidirectional_hits	collapse_bidirectional_hits
collapse_protein_ids	collapse_protein_ids
create_species_id_table	create_species_id_table
diamond_is_installed	diamond_is_installed
edges	edges
export_sequences	export_sequences
fasta2AAStringSetlist	fasta2AAStringSetlist
find_GS_clusters	find_GS_clusters
gff2GRangesList	gff2GRangesList
infer_microsynteny_phylogeny	infer_microsynteny_phylogeny
infer_syntenet	infer_syntenet
interspecies_synteny	interspecies_synteny
intraspecies_synteny	intraspecies_synteny
iqtree_is_installed	iqtree_is_installed
iqtree_version	iqtree_version
last_is_installed	last_is_installed
make_bidirectional	make_bidirectional
network	network
parse_collinearity	parse_collinearity
phylogenomic_profile	phylogenomic_profile
plot_network	plot_network
plot_profiles	plot_profiles
process_input	process_input
profiles2phylip	profiles2phylip
proteomes	proteomes
rcpp_mcscanx_file	rcpp_mcscanx_file
read_diamond	read_diamond
run_diamond	run_diamond
run_last	run_last
scerevisiae_annot	scerevisiae_annot
scerevisiae_diamond	scerevisiae_diamond
syntenet	syntenet-package
