Package: slingshot
Title: Tools for ordering single-cell sequencing
Version: 2.18.0
Description: Provides functions for inferring continuous, branching
        lineage structures in low-dimensional data. Slingshot was
        designed to model developmental trajectories in single-cell RNA
        sequencing data and serve as a component in an analysis
        pipeline after dimensionality reduction and clustering. It is
        flexible enough to handle arbitrarily many branching events and
        allows for the incorporation of prior knowledge through
        supervised graph construction.
Authors@R: c(
  person("Kelly", "Street", email = "street.kelly@gmail.com", role = c("aut", "cre", "cph")),
  person("Davide","Risso", role = "aut",email = "risso.davide@gmail.com"),
  person("Diya","Das", role = "aut", email = "diyadas@berkeley.edu"),
  person("Sandrine","Dudoit", role = "ths", email = "sandrine@stat.berkeley.edu"),
  person("Koen","Van den Berge", role = "ctb"),
  person(
      "Robrecht", 
      "Cannoodt", 
      email = "rcannood@gmail.com", 
      role = c("ctb"),
      comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")
    ))
License: Artistic-2.0
Depends: R (>= 4.0), princurve (>= 2.0.4), stats, TrajectoryUtils
Imports: graphics, grDevices, igraph, matrixStats, methods, S4Vectors,
        SingleCellExperiment, SummarizedExperiment
Suggests: BiocGenerics, BiocStyle, clusterExperiment,
        DelayedMatrixStats, knitr, mclust, mgcv, RColorBrewer, rgl,
        rmarkdown, testthat, uwot, covr
VignetteBuilder: knitr
LazyData: false
RoxygenNote: 7.2.0
Encoding: UTF-8
biocViews: Clustering, DifferentialExpression, GeneExpression, RNASeq,
        Sequencing, Software, Sequencing, SingleCell, Transcriptomics,
        Visualization
BugReports: https://github.com/kstreet13/slingshot/issues
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:45:42 UTC
RemoteUrl: https://github.com/bioc/slingshot
RemoteRef: RELEASE_3_22
RemoteSha: 1c825f7a5eb8f9f9f4d1925fa920c5c67ea440b8
NeedsCompilation: no
Packaged: 2026-02-02 08:07:08 UTC; root
Author: Kelly Street [aut, cre, cph],
  Davide Risso [aut],
  Diya Das [aut],
  Sandrine Dudoit [ths],
  Koen Van den Berge [ctb],
  Robrecht Cannoodt [ctb] (ORCID:
    <https://orcid.org/0000-0003-3641-729X>, github: rcannood)
Maintainer: Kelly Street <street.kelly@gmail.com>
Built: R 4.5.2; ; 2026-02-02 08:09:04 UTC; unix
