Changes in version 1.4.1
-------------------------

IMPROVEMENT

    o add citation.
    
Changes in version 1.3.21
-------------------------

IMPROVEMENT

    o improve the reset button for tjviewer

Changes in version 1.3.20
-------------------------

IMPROVEMENT

    o update the documentations in DESCRIPTION.
    
Changes in version 1.3.19
-------------------------

IMPROVEMENT

    o update the documentations.
    o add a reset button for tjviewer
    
Changes in version 1.3.17
-------------------------

BUG FIXES

    o update the author list.
    
Changes in version 1.3.15
-------------------------

NEW FEATURES

    o view3dStructure for multiple sequences.
    
Changes in version 1.3.14
-------------------------

NEW FEATURES

    o Add scale bar in threejsViewer.
    
Changes in version 1.3.13
-------------------------

BUG FIXES

    o Fix the issue for fill_NA if there are multiple NA values in dist matrix.

Changes in version 1.3.12
-------------------------

NEW FEATURES

    o Add function to call TADs and compartments for spatial distance.
    
Changes in version 1.3.11
-------------------------

NEW FEATURES

    o Add DSDC distance method for cellDistance.
    
Changes in version 1.3.10
-------------------------

IMPROVEMENT

    o Fix multiple issues for PDF exporter.
    
Changes in version 1.3.9
-------------------------

NEW FEATURES

    o Add NMI and ARI distance method for cellDistance.

Changes in version 1.3.8
-------------------------

IMPROVEMENT

    o Add lwd controlor for GenomicInteraction links.
    
Changes in version 1.3.7
-------------------------

IMPROVEMENT

    o Change the default value of normalized for TSS measurement to false.
    
Changes in version 1.3.6
-------------------------

NEW FEATURES

    o Export the function cellDistance.
    
Changes in version 1.3.5
-------------------------

IMPROVEMENT

    o Multiprocess for cellClusters.
    
Changes in version 1.3.4
-------------------------

NEW FEATURES

    o Add function cellClusters.
    
Changes in version 1.3.2
-------------------------

BUG FIXES

    o Move all geos into a sub properties in tjviewer.
    
Changes in version 1.3.1
-------------------------

NEW FEATURES

    o Add hide/show button for each element in tjviewer.
    
Changes in version 1.1.11
-------------------------

NEW FEATURES

    o Add createTADGeometries function.

Changes in version 1.1.10
-------------------------

NEW FEATURES

    o Add pointCluster.
    
Changes in version 1.1.9
-------------------------

BUG FIXES

    o Fix multiple typos.
    
Changes in version 1.1.8
-------------------------

BUG FIXES

    o Fix the issues "Uncaught SyntaxError: Expected ',' or ']' after array element in JSON" if data.frame is too big.
    
Changes in version 1.1.7
-------------------------

BUG FIXES

    o Fix the issues of measurment marker do not rotate and unexpected resize window when export.
    
Changes in version 1.1.6
-------------------------

BUG FIXES

    o Export pdf with visible layers only.
    
Changes in version 1.1.5
-------------------------

NEW FEATURES

    o Add pdf exporter.
    
Changes in version 1.1.4
-------------------------

BUG FIXES

    o Fix the input check issue in kabsch.
    
Changes in version 1.1.3
-------------------------

BUG FIXES

    o Update email address.
    
Changes in version 1.1.2
-------------------------

NEW FEATURES

    o Add resolution for view3dStructure.
    
Changes in version 1.1.1
-------------------------

NEW FEATURES

    o Add autocomplete input for search key words.
    
Changes in version 0.99.18
-------------------------

BUG FIXES

    o Fix the issue for measurements in threeJsViewer when the world matrix updated.
    
Changes in version 0.99.17
-------------------------

NEW FEATURES

    o Add parameter genomicScoreRange parameter for create3dGenomicSignals.
    
Changes in version 0.99.16

    o Fix the error in mdsPlot: 'dims' must contain all (i,j) pairs

Changes in version 0.99.15
-------------------------

BUG FIXES

    o Change the background color set.
    o Remove local version of CSS2DRenderer.

Changes in version 0.99.14
-------------------------

NEW FEATURES

    o add measurement for threeJsViewer.
    
Changes in version 0.99.13
-------------------------

NEW FEATURES

    o add switch for orthographic and perspective projection to camera.
    o add flip controller.

Changes in version 0.99.12
-------------------------

NEW FEATURES

    o change OrbitControls to ArcballControls.

Changes in version 0.99.11
-------------------------

BUG FIXES

    o Handle the error if NA values is in the GenoSig of create3dGenomicSignals.
    
Changes in version 0.99.10
-------------------------

NEW FEATURES

    o Add title and subregion for threeJsViewer.

Changes in version 0.99.9
-------------------------

NEW FEATURES

    o Add possible to export the GRanges object for mdsPlot.
    
Changes in version 0.99.8
-------------------------

BUG FIXES

    o Fix the warning 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
    
Changes in version 0.99.7
-------------------------

NEW FEATURES

    o Add `saveWidget` sample code to vignettes.
    
Changes in version 0.99.6
-------------------------

NEW FEATURES

    o Add LICENSE items for threejs.
    o Add help page for the package itself.
    
Changes in version 0.99.5
-------------------------

BUG FIXES

    o Fix the warning message in create3dGenomicSignals when calling mapply.
    
Changes in version 0.99.4
-------------------------

NEW FEATURES

    o Add type 'polygon' to threeJsGeometry.
    
Changes in version 0.99.3
-------------------------

NEW FEATURES

    o Add rotation slot to threeJsGeometry.
    
Changes in version 0.99.2
-------------------------

NEW FEATURES

    o Fix a bug that color info is missing when create 3d geometries.
    o Update the documentation.
    
Changes in version 0.99.0
-------------------------

NEW FEATURES

    o Prepare to submittion.
    
Changes in version 0.0.25
-------------------------

BUG FIXES

    o simplify the documentation.
    
Changes in version 0.0.24
-------------------------

NEW FEATURES

    o add more geometries for rglViewer.
    
Changes in version 0.0.23
-------------------------

BUG FIXES

    o Fix multiple bugs.
    o Add multiple unit test.
    o Rewrite the plotInteractionData vignette.

Changes in version 0.0.22
-------------------------

NEW FEATURES

    o Fix the code style.
    o Add multiple unit test.
    o export the create3dGenomicSignals function.
    
Changes in version 0.0.21
-------------------------

NEW FEATURES

    o Add resize block for threeJsViewer.
    
Changes in version 0.0.20
-------------------------

NEW FEATURES

    o Add unit test.
    
Changes in version 0.0.19
-------------------------

NEW FEATURES

    o Add group adjust controller for threeJsViewer.
    o Add background color controller for threeJsViewer.
    o Make the controller dragable for threeJsViewer.
    o Add signalTransformFun for view3dStructure.
    
Changes in version 0.0.18
-------------------------

NEW FEATURES

    o Add search by coordinates for threeJsViewer.
    
Changes in version 0.0.17
-------------------------

NEW FEATURES

    o Add key control and linked OribitControl for threeJsViewer.
    
Changes in version 0.0.16
-------------------------

NEW FEATURES

    o Add side by side comparison for threeJsViewer.
    
Changes in version 0.0.15
-------------------------

NEW FEATURES

    o Add search box for threeJsViewer.
    
Changes in version 0.0.14
-------------------------

BUG FIXES

    o Center the 3d plots.
    
Changes in version 0.0.13
-------------------------

NEW FEATURES

    o update ATAC-seq signals to Genomic signals.
    
Changes in version 0.0.12
-------------------------

NEW FEATURES

    o add plotScCells vignettes.

Changes in version 0.0.11
-------------------------

BUG FIXES

    o fix the license issue.
    
Changes in version 0.0.9
-------------------------

NEW FEATURES

    o add video exporter for tjviewer.
    
Changes in version 0.0.8
-------------------------

NEW FEATURES

    o add view 3d cells.
    
Changes in version 0.0.7
-------------------------

BUG FIXES

    o Change atacSig to segments for tjviewer.
    
Changes in version 0.0.6
-------------------------

BUG FIXES

    o Fix the arrow direction for tjviewer.
    
Changes in version 0.0.5
-------------------------

BUG FIXES

    o Rename the package.
    
Changes in version 0.0.4
-------------------------

NEW FEATURES

    o Add a vignettes.
    
Changes in version 0.0.3
-------------------------

NEW FEATURES

    o Add label geometry.
    
Changes in version 0.0.2
-------------------------

NEW FEATURES

    o Add text geometry.
    
Changes in version 0.0.1
-------------------------

NEW FEATURES

    o Init.
    o Create the htmlwidgets.
