gDRcore-package	gDRcore-package
.calculate_matrix_metric	calculate_matrix_metric
.map_references	dot-map_references
add_intermediate_data	add_intermediate_data
annotate_dt_with_cell_line	annotate_dt_with_cell_line
annotate_dt_with_drug	annotate_dt_with_drug
annotate_mae_with_cell_line	annotate_mae_with_cell_line
annotate_mae_with_drug	annotate_mae_with_drug
annotate_se_with_cell_line	annotate_se_with_cell_line
annotate_se_with_drug	annotate_se_with_drug
assert_cell_line_annotation	assert_cell_line_annotation
assert_drug_annotation	assert_drug_annotation
average_SE	runDrugResponseProcessingPipelineFxns
calculate_Bliss	calculate_matrix_metric
calculate_endpt_GR_value	calculate_GR_value
calculate_excess	calculate_excess
calculate_GR_value	calculate_GR_value
calculate_HSA	calculate_matrix_metric
calculate_matrix_metric	calculate_matrix_metric
calculate_score	calculate_score
calculate_time_dep_GR_value	calculate_GR_value
cleanup_metadata	cleanup_metadata
convert_mae_to_raw_data	convert_mae_to_raw_data
convert_se_to_raw_data	convert_se_to_raw_data
create_and_normalize_SE	runDrugResponseProcessingPipelineFxns
create_SE	runDrugResponseProcessingPipelineFxns
data_model	data_model
data_model.character	data_model.character
data_model.data.table	data_model.data.table
do_skip_step	do_skip_step
fit_SE	runDrugResponseProcessingPipelineFxns
fit_SE.combinations	fit_SE.combinations
gDRcore	gDRcore-package
generateCodilution	generateCodilution
generateCodilutionSmall	generateCodilutionSmall
generateComboMatrix	generateComboMatrix
generateComboMatrixSmall	generateComboMatrixSmall
generateComboNoNoiseData	generateComboNoNoiseData
generateComboNoNoiseData2	generateComboNoNoiseData2
generateComboNoNoiseData3	generateComboNoNoiseData3
generateLigandData	generateLigandData
generateMediumData	generateMediumData
generateNoiseRawData	generateNoiseRawData
generateNoNoiseRawData	generateNoNoiseRawData
generateTripleComboMatrix	generateTripleComboMatrix
get_assays_per_pipeline_step	get_assays_per_pipeline_step
get_cellline_annotation_from_dt	get_cellline_annotation_from_dt
get_cell_line_annotation	get_cell_line_annotation
get_default_nested_identifiers	get_default_nested_identifiers
get_default_nested_identifiers.data.table	get_default_nested_identifiers
get_default_nested_identifiers.SummarizedExperiment	get_default_nested_identifiers
get_drug_annotation	get_drug_annotation
get_drug_annotation_from_dt	get_drug_annotation_from_dt
get_mae_from_intermediate_data	get_mae_from_intermediate_data
get_pipeline_steps	get_pipeline_steps
get_relevant_ids	get_relevant_ids
grr_matches	grr_matches
identify_data_type	identify_data_type
identify_keys	identify_keys
is_preceding_step	is_preceding_step
map_df	map_df
map_ids_to_fits	map_ids_to_fits
map_untreated	map_untreated
merge_data	merge_data
normalize_SE	runDrugResponseProcessingPipelineFxns
order_result_df	order_result_df
prepare_input	prepare_input
prepare_input.data.table	prepare_input.data.table
prepare_input.MultiAssayExperiment	prepare_input.MultiAssayExperiment
process_perturbations	process_perturbations
read_intermediate_data	read_intermediate_data
replace_conc_with_standardized_conc	replace_conc_with_standardized_conc
runDrugResponseProcessingPipeline	runDrugResponseProcessingPipelineFxns
runDrugResponseProcessingPipelineFxns	runDrugResponseProcessingPipelineFxns
save_intermediate_data	save_intermediate_data
split_raw_data	split_raw_data
test_synthetic_data	test_synthetic_data
validate_data_models_availability	validate_data_models_availability
