citHeader("Please use the first reference below to cite the eisaR software itself, the second reference (Gaidatzis et al.) to cite the EISA paper, or the third (Soneson et al.) to cite the preprocessing analysis for RNA velocity.")

citEntry(entry="Manual",
	 title="eisaR: Exon-Intron Split Anaalysis (EISA) in R",
	 author=personList(as.person("Michael B Stadler"),
	           as.person("Dimos Gaidatzis"),
			   as.person("Lukas Burger"),
			   as.person("Charlotte Soneson")),
	 year=2020,
	 note="R package version 1.0",
	 textVersion="Stadler MB, Gaidatzis D, Burger L and Soneson C. eisaR: Exon-Intron Split Analysis (EISA) in R. R package version 1.0"
)

citEntry(entry="article",
	 title="Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation",
	 author=personList(as.person("Dimos Gaidatzis"),
			   as.person("Lukas Burger"),
			   as.person("Michael B Stadler")),
	 journal="Nature Biotechnology",
     volume="33",
     number="7",
     pages="722--729",
	 year=2015,
	 note="PMID:26098447",
     doi="10.1038/nbt.3269",
	 textVersion="Gaidatzis D, Burger L, Florescu M and Stadler MB. Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation. Nature Biotechnology 33(7):722-729 (2015)."
)

citEntry(entry="article",
	 title="Preprocessing choices affect RNA velocity results for droplet scRNA-seq data",
	 author=personList(as.person("Charlotte Soneson"),
			   as.person("Avi Srivastava"),
			   as.person("Rob Patro"),
			   as.person("Michael B Stadler")),
	 journal="PLoS Computational Biology",
	 volume="17",
	 number="1",
	 pages="e1008585",
	 year=2021,
	 note="PMID:33428615",
     doi="10.1371/journal.pcbi.1008585",
	 textVersion="Soneson C, Srivastava A, Patro R and Stadler MB. Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. PLoS Computational Biology 17(1):e1008585 (2021)."
)

citFooter("This free open-source software implements academic
research by the authors and co-workers. If you use it,
please support the project by citing the appropriate
journal articles.")
