Package: edge
Type: Package
Title: Extraction of Differential Gene Expression
Date: 2015-04-15
Version: 2.42.0
Author: John D. Storey, Jeffrey T. Leek and Andrew J. Bass
Maintainer: John D. Storey <jstorey@princeton.edu>, Andrew J. Bass
 <ajbass@emory.edu>
biocViews: MultipleComparison, DifferentialExpression, TimeCourse,
        Regression, GeneExpression, DataImport
Description: The edge package implements methods for carrying out differential
    expression analyses of genome-wide gene expression studies. Significance testing
    using the optimal discovery procedure and generalized likelihood ratio tests
    (equivalent to F-tests and t-tests) are implemented for general study designs.
    Special functions are available to facilitate the analysis of common study
    designs, including time course experiments. Other packages such as sva
    and qvalue are integrated in edge to provide a wide range of tools for gene
    expression analysis.
VignetteBuilder: knitr
Imports: methods, splines, sva, qvalue(>= 1.99.0), MASS
Suggests: testthat, knitr, ggplot2, reshape2
Depends: R(>= 3.1.0), Biobase
URL: https://github.com/jdstorey/edge
BugReports: https://github.com/jdstorey/edge/issues
LazyData: true
License: MIT + file LICENSE
NeedsCompilation: yes
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/edge
git_branch: RELEASE_3_22
git_last_commit: fe1a757
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 02:40:10 UTC; biocbuild
Built: R 4.5.1; aarch64-apple-darwin20; 2025-10-30 09:23:25 UTC; unix
